Variant report

Variant	rs55763964
Chromosome Location	chr4:90117209-90117210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs58151751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61471205	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61670865	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6821885	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6822518	1.00[AMR][1000 genomes]
rs72869823	1.00[AMR][1000 genomes]
rs72877701	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879605	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879631	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879642	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879643	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879655	1.00[AMR][1000 genomes]
rs72879659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845877	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv830002	chr4:90056232-90258865	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90115400-90117400	Weak transcription	Liver	Liver
2	chr4:90115600-90117600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:90116600-90117600	Enhancers	Fetal Intestine Small	intestine
4	chr4:90116600-90117800	Enhancers	Fetal Intestine Large	intestine
5	chr4:90116600-90117800	Enhancers	Pancreas	Pancrea
6	chr4:90116800-90118400	Enhancers	HUVEC	blood vessel
7	chr4:90117000-90117600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:90117200-90118000	Flanking Active TSS	A549	lung
9	chr4:90117200-90118200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:90117200-90118200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:90117200-90118400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:90117200-90118400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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