Variant report

Variant	rs55764158
Chromosome Location	chr3:119511375-119511376
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12492296	0.81[ASN][1000 genomes]
rs13059232	0.92[ASN][1000 genomes]
rs13091204	0.89[ASN][1000 genomes]
rs1357459	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1403526	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2461817	0.81[ASN][1000 genomes]
rs2461821	0.89[ASN][1000 genomes]
rs2461822	0.95[ASN][1000 genomes]
rs2461823	0.92[ASN][1000 genomes]
rs2472677	0.86[ASN][1000 genomes]
rs4440154	0.94[ASN][1000 genomes]
rs4688040	0.82[ASN][1000 genomes]
rs6771638	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6772976	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119500200-119514400	Weak transcription	Small Intestine	intestine
2	chr3:119501800-119515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:119503200-119513400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:119505800-119512000	Weak transcription	HepG2	liver
5	chr3:119508000-119513400	Weak transcription	Fetal Intestine Large	intestine
6	chr3:119510200-119512000	Strong transcription	Fetal Intestine Small	intestine
7	chr3:119510600-119511400	Strong transcription	Duodenum Mucosa	Duodenum
8	chr3:119510800-119512400	Genic enhancers	Liver	Liver
9	chr3:119511000-119512400	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr3:119511200-119513800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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