Variant report

Variant	rs557659233
Chromosome Location	chr6:69471096-69471097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2655218	chr6:69470728-69472243	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2220750	chr6:69470994-69471907	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3472769	chr6:69471062-69471836	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69468400-69480000	Weak transcription	Fetal Lung	lung
3	chr6:69470400-69471200	Active TSS	Brain Hippocampus Middle	brain
4	chr6:69470600-69471400	Flanking Active TSS	K562	blood
5	chr6:69470800-69471200	Active TSS	Brain Anterior Caudate	brain
6	chr6:69470800-69471200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:69470800-69471200	Enhancers	Fetal Brain Male	brain
8	chr6:69470800-69471400	Flanking Active TSS	Brain Angular Gyrus	brain
9	chr6:69471000-69471200	Flanking Active TSS	Brain Substantia Nigra	brain
10	chr6:69471000-69471400	Active TSS	Brain Cingulate Gyrus	brain
11	chr6:69471000-69471600	Active TSS	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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