Variant report

Variant	rs55766770
Chromosome Location	chr12:64929802-64929803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10878193	0.86[AFR][1000 genomes]
rs10878194	0.82[AFR][1000 genomes]
rs11175433	0.90[AFR][1000 genomes]
rs11175436	0.90[AFR][1000 genomes]
rs11175437	0.86[AFR][1000 genomes]
rs11175438	0.86[AFR][1000 genomes]
rs4964111	0.90[AFR][1000 genomes]
rs61933868	0.90[AFR][1000 genomes]
rs61933871	0.82[AFR][1000 genomes]
rs7302018	0.86[AFR][1000 genomes]
rs7302385	0.86[AFR][1000 genomes]
rs7306956	0.86[AFR][1000 genomes]
rs7312168	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64927400-64930400	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:64927800-64938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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