Variant report

Variant	rs557708111
Chromosome Location	chr21:14346255-14346256
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586984	chr21:14338286-14432856	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1809537	chr21:14338286-14497151	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv11295	chr21:14338455-14368624	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv3367259	chr21:14339247-14349344	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3329962	chr21:14342320-14347695	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3335863	chr21:14342797-14360444	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	esv19489	chr21:14343414-14351683	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv3417672	chr21:14343968-14346460	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3345901	chr21:14344359-14350923	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
10	esv3366306	chr21:14344738-14347898	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3439928	chr21:14344787-14350448	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
12	esv3386441	chr21:14344807-14350180	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
13	esv3334037	chr21:14344821-14346460	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
14	esv3403119	chr21:14345827-14346940	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3391133	chr21:14345836-14346618	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3399607	chr21:14345920-14347207	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:14338200-14351800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr21:14338200-14363600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr21:14338400-14347000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr21:14338800-14350800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr21:14339400-14359000	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links