Variant report

Variant	rs557709004
Chromosome Location	chr3:105554885-105554886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105553976..105556329-chr3:105573888..105575863,2	MCF-7	breast:
2	chr3:105552906..105555738-chr3:105560216..105562214,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv508234	chr3:105549864-105565806	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105483200-105555200	Weak transcription	Placenta	Placenta
2	chr3:105511400-105566400	Weak transcription	Aorta	Aorta
3	chr3:105532200-105563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:105533600-105560600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:105533800-105570000	Weak transcription	Dnd41	blood
6	chr3:105534200-105566200	Weak transcription	Brain Germinal Matrix	brain
7	chr3:105540800-105569600	Weak transcription	Fetal Thymus	thymus
8	chr3:105542600-105555400	Weak transcription	Brain Angular Gyrus	brain
9	chr3:105542600-105566000	Weak transcription	Fetal Stomach	stomach
10	chr3:105543000-105555600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:105543400-105555800	Weak transcription	HepG2	liver
12	chr3:105543400-105560800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:105543400-105581200	Weak transcription	Gastric	stomach
14	chr3:105543600-105557200	Weak transcription	Fetal Intestine Large	intestine
15	chr3:105543800-105571000	Weak transcription	Lung	lung
16	chr3:105544200-105559200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:105544200-105584600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:105546600-105586200	Weak transcription	Esophagus	oesophagus
19	chr3:105546800-105560800	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:105547200-105555000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:105547200-105557400	Weak transcription	Fetal Intestine Small	intestine
22	chr3:105547400-105557200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:105547800-105555400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:105547800-105557400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:105548400-105561200	Weak transcription	K562	blood
26	chr3:105548400-105561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:105548600-105559600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:105549000-105555000	Weak transcription	Right Ventricle	heart
29	chr3:105549000-105560800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr3:105549000-105571800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:105549200-105555400	Weak transcription	Psoas Muscle	Psoas
32	chr3:105549200-105564400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:105549400-105557200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:105549600-105558000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:105549800-105556000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:105550000-105562600	Weak transcription	HUVEC	blood vessel
37	chr3:105550000-105569600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:105550400-105555000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr3:105550400-105555000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:105550400-105555400	Weak transcription	Left Ventricle	heart
41	chr3:105551000-105556800	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr3:105551800-105556600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:105551800-105560800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr3:105552000-105555400	Weak transcription	Right Atrium	heart
45	chr3:105552200-105555400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:105552400-105555400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:105552800-105556600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr3:105553000-105555400	Weak transcription	Primary T cells from cord blood	blood
49	chr3:105553400-105555800	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr3:105553400-105556200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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