Variant report

Variant	rs55771646
Chromosome Location	chr2:168414088-168414089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16853751	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6739963	1.00[EUR][1000 genomes]
rs73026041	0.89[ASN][1000 genomes]
rs73026043	0.89[ASN][1000 genomes]
rs73026070	1.00[EUR][1000 genomes]
rs73026072	0.87[EUR][1000 genomes]
rs73972288	0.92[ASN][1000 genomes]
rs73972292	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1008206	chr2:168401249-168452887	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv528466	chr2:168402224-168447851	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv583593	chr2:168402224-168452630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1004326	chr2:168403386-168452887	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv963183	chr2:168412509-168414582	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168400200-168416000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:168403800-168414200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:168411600-168415800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr2:168412200-168415400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:168412400-168415200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr2:168413200-168415200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr2:168414000-168414400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr2:168414000-168414600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
9	chr2:168414000-168415000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr2:168414000-168415000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:168414000-168415200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr2:168414000-168415200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
13	chr2:168414000-168415200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:168414000-168415600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr2:168414000-168415800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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