Variant report

Variant	rs557718428
Chromosome Location	chr4:15644470-15644471
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15643577..15645460-chr4:15655132..15657368,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3464805	chr4:15643183-15646192	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3464806	chr4:15643188-15646159	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3397107	chr4:15643237-15646120	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3464807	chr4:15643251-15646118	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15568400-15655600	Weak transcription	Gastric	stomach
2	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
3	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
4	chr4:15602600-15655600	Weak transcription	Pancreas	Pancrea
5	chr4:15605800-15650200	Weak transcription	Stomach Mucosa	stomach
6	chr4:15618600-15651000	Weak transcription	Spleen	Spleen
7	chr4:15622200-15655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:15622600-15645800	Weak transcription	Aorta	Aorta
9	chr4:15625200-15644800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr4:15626400-15646000	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr4:15627400-15645800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:15627400-15650000	Weak transcription	Fetal Heart	heart
13	chr4:15627400-15651200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:15627400-15652400	Weak transcription	Fetal Brain Male	brain
15	chr4:15627600-15645600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:15627600-15646800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:15627600-15650200	Weak transcription	Right Ventricle	heart
18	chr4:15628000-15655600	Weak transcription	Lung	lung
19	chr4:15628200-15645800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:15629600-15650400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:15633600-15646400	Strong transcription	Fetal Thymus	thymus
22	chr4:15634600-15646600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr4:15635000-15647000	Strong transcription	HSMM	muscle
24	chr4:15635600-15645000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:15635600-15646400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:15635600-15655600	Weak transcription	Esophagus	oesophagus
27	chr4:15635800-15654800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:15636800-15651400	Weak transcription	Hela-S3	cervix
29	chr4:15638600-15645800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:15638600-15648600	Weak transcription	Ovary	ovary
31	chr4:15638600-15651400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:15638800-15647000	Weak transcription	Psoas Muscle	Psoas
33	chr4:15638800-15651600	Weak transcription	NHLF	lung
34	chr4:15638800-15655000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:15639000-15645600	Weak transcription	Brain Angular Gyrus	brain
36	chr4:15639000-15650800	Weak transcription	K562	blood
37	chr4:15640200-15645600	Weak transcription	Brain Substantia Nigra	brain
38	chr4:15640200-15646200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:15640400-15649600	Weak transcription	Brain Hippocampus Middle	brain
40	chr4:15640400-15651600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr4:15641000-15644600	Strong transcription	Fetal Kidney	kidney
42	chr4:15641200-15649400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:15641200-15649400	Weak transcription	GM12878-XiMat	blood
44	chr4:15641400-15647000	Weak transcription	Primary T cells from cord blood	blood
45	chr4:15641400-15650800	Weak transcription	A549	lung
46	chr4:15641600-15645600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr4:15641600-15651400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr4:15641800-15645800	Weak transcription	Brain Anterior Caudate	brain
49	chr4:15641800-15645800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr4:15641800-15649200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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