Variant report

Variant	rs55772443
Chromosome Location	chr8:126402841-126402842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126401809..126404508-chr8:126412101..126414210,2	MCF-7	breast:
2	chr8:126401472..126405632-chr8:126442348..126443996,3	MCF-7	breast:
3	chr8:126400844..126403508-chr8:126441583..126445667,4	MCF-7	breast:
4	chr8:126395154..126398210-chr8:126400039..126403336,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57924165	1.00[AFR][1000 genomes]
rs73704985	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126398600-126404000	Weak transcription	Esophagus	oesophagus
2	chr8:126399200-126406000	Weak transcription	Gastric	stomach
3	chr8:126399600-126404200	Weak transcription	Pancreas	Pancrea
4	chr8:126400600-126403000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:126400600-126403000	Enhancers	Lung	lung
6	chr8:126400600-126403200	Weak transcription	Hela-S3	cervix
7	chr8:126400800-126404000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:126401400-126403000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:126401400-126403000	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr8:126401400-126403000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr8:126401400-126403800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:126401400-126403800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:126401400-126404000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:126401600-126403800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:126401600-126403800	Weak transcription	Right Atrium	heart
16	chr8:126401600-126403800	Weak transcription	A549	lung
17	chr8:126401600-126404000	Weak transcription	Brain Anterior Caudate	brain
18	chr8:126401600-126404000	Weak transcription	Left Ventricle	heart
19	chr8:126401600-126404200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:126401600-126404600	Weak transcription	Right Ventricle	heart
21	chr8:126401600-126404800	Weak transcription	HSMMtube	muscle
22	chr8:126401600-126407600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:126401800-126403600	Weak transcription	GM12878-XiMat	blood
24	chr8:126401800-126403800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:126401800-126403800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr8:126401800-126403800	Weak transcription	HUVEC	blood vessel
27	chr8:126401800-126403800	Weak transcription	Osteobl	bone
28	chr8:126401800-126404000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:126401800-126404200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:126401800-126404600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr8:126402000-126404000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr8:126402200-126403200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr8:126402400-126403200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr8:126402400-126403800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr8:126402400-126403800	Weak transcription	K562	blood
36	chr8:126402400-126404800	Enhancers	Fetal Muscle Trunk	muscle
37	chr8:126402600-126404000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr8:126402800-126403000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr8:126402800-126403800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr8:126402800-126405000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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