Variant report

Variant	rs557783294
Chromosome Location	chr10:49902480-49902481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49895200-49904200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:49895200-49906200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr10:49897400-49903200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:49899600-49903800	Weak transcription	Spleen	Spleen
6	chr10:49900200-49908600	Weak transcription	Colonic Mucosa	Colon
7	chr10:49900400-49902800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:49900400-49906600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:49900800-49906800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:49900800-49908800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:49901000-49902800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:49901200-49903000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:49901600-49907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:49902200-49903400	Enhancers	Fetal Muscle Leg	muscle
15	chr10:49902200-49907000	Weak transcription	Right Atrium	heart
16	chr10:49902400-49903400	Enhancers	GM12878-XiMat	blood
17	chr10:49902400-49904200	Genic enhancers	Primary B cells from cord blood	blood
18	chr10:49902400-49906000	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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