Variant report

Variant	rs55779637
Chromosome Location	chr5:14868057-14868058
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:14863140..14869148-chr5:14869858..14873392,6	MCF-7	breast:
2	chr5:14867615..14869927-chr5:14870237..14872388,4	K562	blood:
3	chr5:14864911..14869985-chr5:14870388..14873560,6	K562	blood:

Variant related genes	Relation type
ENSG00000272057	Chromatin interaction
ENSG00000154122	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2753381	chr5:14814900-14882800	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv2755533	chr5:14814900-14882800	Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	esv2755538	chr5:14814900-14927500	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
6	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	nsv969946	chr5:14867971-14880715	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14824800-14869600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr5:14831000-14870400	Weak transcription	Spleen	Spleen
3	chr5:14835600-14869000	Weak transcription	NHDF-Ad	bronchial
4	chr5:14837400-14869400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:14844800-14869200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:14848800-14870000	Weak transcription	Thymus	Thymus
7	chr5:14849200-14869800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr5:14850800-14869000	Weak transcription	Brain Germinal Matrix	brain
9	chr5:14851600-14869800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:14853200-14869000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:14855400-14868800	Weak transcription	Hela-S3	cervix
12	chr5:14855400-14870000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:14855400-14870000	Weak transcription	Placenta	Placenta
14	chr5:14856600-14869000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr5:14857400-14869000	Weak transcription	Primary T cells from cord blood	blood
16	chr5:14860400-14868800	Weak transcription	Dnd41	blood
17	chr5:14860800-14869200	Weak transcription	HMEC	breast
18	chr5:14860800-14869400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:14861800-14869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:14861800-14870400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:14862000-14869200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:14862000-14869400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr5:14862200-14868800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:14862400-14868800	Weak transcription	Adipose Nuclei	Adipose
25	chr5:14863200-14868200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr5:14863200-14868800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr5:14863400-14868400	Weak transcription	Fetal Intestine Small	intestine
28	chr5:14863600-14868600	Weak transcription	Liver	Liver
29	chr5:14863600-14868800	Weak transcription	Right Atrium	heart
30	chr5:14863600-14869000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr5:14863800-14868600	Weak transcription	Stomach Mucosa	stomach
32	chr5:14863800-14868800	Weak transcription	Fetal Brain Female	brain
33	chr5:14863800-14868800	Weak transcription	Right Ventricle	heart
34	chr5:14864000-14868400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr5:14864000-14868600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr5:14864000-14868600	Weak transcription	HepG2	liver
37	chr5:14864200-14869200	Weak transcription	Aorta	Aorta
38	chr5:14864200-14870000	Weak transcription	Pancreas	Pancrea
39	chr5:14864800-14869000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr5:14864800-14869000	Weak transcription	Brain Angular Gyrus	brain
41	chr5:14864800-14869000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr5:14865000-14868600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr5:14865000-14868600	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr5:14865000-14869000	Weak transcription	Brain Anterior Caudate	brain
45	chr5:14865200-14868200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr5:14865200-14868600	Weak transcription	Left Ventricle	heart
47	chr5:14865200-14870200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:14865400-14869000	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr5:14865800-14868800	Weak transcription	Psoas Muscle	Psoas
50	chr5:14865800-14869000	Weak transcription	Brain Inferior Temporal Lobe	brain

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