Variant report

Variant	rs557797210
Chromosome Location	chr1:217074313-217074314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217062600-217078000	Weak transcription	Pancreas	Pancrea
2	chr1:217062800-217076000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:217062800-217076200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:217062800-217087800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:217067400-217075800	Weak transcription	Fetal Intestine Large	intestine
6	chr1:217067800-217076000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:217068200-217076000	Weak transcription	Left Ventricle	heart
8	chr1:217072200-217082800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:217073200-217074400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:217073200-217074600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:217073200-217075200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:217073200-217076000	Weak transcription	Brain Angular Gyrus	brain
13	chr1:217073400-217075400	Weak transcription	NHEK	skin
14	chr1:217073600-217074600	Enhancers	Fetal Brain Male	brain
15	chr1:217074000-217074400	Weak transcription	Fetal Lung	lung
16	chr1:217074200-217074600	Enhancers	Fetal Heart	heart
17	chr1:217074200-217074600	Enhancers	Fetal Intestine Small	intestine
18	chr1:217074200-217076400	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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