Variant report

Variant	rs557800042
Chromosome Location	chr8:59801082-59801083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890940	chr8:59785412-59809785	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:59773400-59808200	Weak transcription	Thymus	Thymus
4	chr8:59788200-59803400	Weak transcription	Gastric	stomach
5	chr8:59790600-59804000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:59790800-59811200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:59791400-59811000	Weak transcription	Brain Angular Gyrus	brain
8	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
9	chr8:59794800-59804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:59794800-59811000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:59795000-59805600	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:59795600-59801800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:59795600-59803400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:59797200-59801800	Weak transcription	NHDF-Ad	bronchial
15	chr8:59798600-59802000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr8:59798800-59803200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:59799000-59801400	Weak transcription	Osteobl	bone
18	chr8:59799000-59801800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:59799000-59803400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:59799000-59804200	Weak transcription	HSMM	muscle
21	chr8:59799000-59804600	Weak transcription	Fetal Thymus	thymus
22	chr8:59799200-59801400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:59799200-59801800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr8:59799400-59801600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:59799800-59801400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:59800200-59801400	ZNF genes & repeats	Primary T cells from cord blood	blood
27	chr8:59800600-59809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:59800800-59801200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr8:59800800-59802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:59800800-59803200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:59800800-59809600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:59800800-59810600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:59800800-59811000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr8:59801000-59808000	Weak transcription	Dnd41	blood

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