Variant report

Variant	rs55783055
Chromosome Location	chr22:31557798-31557799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31557219..31558911-chr22:31606404..31608667,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182541	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11705159	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5749219	0.96[EUR][1000 genomes]
rs59671056	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31555400-31558400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr22:31555600-31557800	Active TSS	Ovary	ovary
3	chr22:31555600-31559400	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr22:31556400-31557800	Flanking Active TSS	Dnd41	blood
5	chr22:31556400-31558400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr22:31556600-31557800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr22:31556600-31558400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr22:31556600-31558600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr22:31556800-31557800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr22:31556800-31557800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr22:31556800-31557800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr22:31556800-31557800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr22:31556800-31557800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr22:31556800-31557800	Flanking Active TSS	Brain Angular Gyrus	brain
15	chr22:31556800-31557800	Flanking Active TSS	Brain Hippocampus Middle	brain
16	chr22:31556800-31557800	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr22:31556800-31557800	Flanking Active TSS	Rectal Smooth Muscle	rectum
18	chr22:31556800-31557800	Flanking Active TSS	GM12878-XiMat	blood
19	chr22:31556800-31557800	Flanking Active TSS	NH-A	brain
20	chr22:31556800-31558000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr22:31556800-31558200	Flanking Active TSS	Osteobl	bone
22	chr22:31557000-31557800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr22:31557000-31557800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr22:31557000-31557800	Flanking Active TSS	NHDF-Ad	bronchial
25	chr22:31557000-31558000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr22:31557000-31558200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr22:31557000-31558200	Enhancers	Primary B cells from peripheral blood	blood
28	chr22:31557000-31558200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr22:31557000-31558200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr22:31557000-31558200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr22:31557000-31558200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr22:31557000-31558200	Flanking Active TSS	HMEC	breast
33	chr22:31557000-31558400	Enhancers	Primary T cells fromperipheralblood	blood
34	chr22:31557000-31558600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr22:31557000-31558800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr22:31557000-31558800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr22:31557000-31558800	Flanking Active TSS	Liver	Liver
38	chr22:31557000-31559200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr22:31557000-31569400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr22:31557000-31573000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr22:31557000-31575200	Weak transcription	Esophagus	oesophagus
42	chr22:31557200-31557800	Flanking Active TSS	Fetal Intestine Small	intestine
43	chr22:31557200-31557800	Genic enhancers	Fetal Muscle Leg	muscle
44	chr22:31557200-31557800	Flanking Active TSS	Psoas Muscle	Psoas
45	chr22:31557200-31557800	Flanking Active TSS	HepG2	liver
46	chr22:31557200-31557800	Flanking Active TSS	NHLF	lung
47	chr22:31557200-31558200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr22:31557200-31558200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr22:31557200-31558200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr22:31557200-31558200	Enhancers	Stomach Mucosa	stomach

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