Variant report

Variant	rs557840967
Chromosome Location	chr15:75204208-75204209
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75203809-75205169	PFSK-1	brain:	n/a	n/a
2	NFATC1	chr15:75203987-75204324	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:75204185-75204556	GM12878	blood:	n/a	n/a
4	MAX	chr15:75203959-75204289	K562	blood:	n/a	chr15:75204047-75204056 chr15:75204046-75204056 chr15:75204047-75204056 chr15:75204046-75204056 chr15:75204045-75204058 chr15:75204047-75204056 chr15:75204046-75204057 chr15:75204046-75204057 chr15:75204046-75204057
5	POLR2A	chr15:75204042-75204702	K562	blood:	n/a	n/a
6	POLR2A	chr15:75203978-75204448	K562	blood:	n/a	n/a
7	POLR2A	chr15:75204143-75204258	GM12878	blood:	n/a	n/a
8	POLR2A	chr15:75204198-75204700	HL-60	blood:	n/a	n/a
9	POLR2A	chr15:75204104-75204582	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr15:75203858-75205058	K562	blood:	n/a	n/a
11	E2F6	chr15:75203968-75204219	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75204201..75207198-chr15:75248620..75251894,3	MCF-7	breast:
2	chr12:120729160..120731044-chr15:75203299..75205954,2	MCF-7	breast:
3	chr15:75202900..75206033-chr15:75227299..75230499,5	K562	blood:
4	chr15:75135584..75137401-chr15:75203123..75205783,2	K562	blood:
5	chr15:75196237..75205947-chr15:75227299..75233104,18	K562	blood:
6	chr15:75197065..75200816-chr15:75202380..75207504,10	K562	blood:

Variant related genes	Relation type
FAM219B	TF binding region
ENSG00000178741	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000178761	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv3312325	chr15:75203053-75210647	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	esv3312326	chr15:75203067-75210644	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75199600-75229400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75199800-75209400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:75199800-75219600	Weak transcription	Aorta	Aorta
4	chr15:75200000-75205400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:75200000-75205400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:75200000-75205400	Weak transcription	HSMMtube	muscle
7	chr15:75200000-75205600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:75200000-75205600	Weak transcription	Primary B cells from cord blood	blood
9	chr15:75200000-75206400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:75200000-75207000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:75200000-75207000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:75200000-75207000	Weak transcription	Esophagus	oesophagus
13	chr15:75200000-75207200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:75200000-75207200	Weak transcription	Gastric	stomach
15	chr15:75200000-75209600	Weak transcription	Psoas Muscle	Psoas
16	chr15:75200000-75209800	Weak transcription	Ovary	ovary
17	chr15:75200000-75209800	Weak transcription	Small Intestine	intestine
18	chr15:75200000-75211000	Weak transcription	Fetal Kidney	kidney
19	chr15:75200000-75211600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:75200000-75221000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:75200000-75224000	Weak transcription	Stomach Mucosa	stomach
22	chr15:75200200-75204400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:75200200-75204800	Weak transcription	HSMM	muscle
24	chr15:75200200-75205600	Weak transcription	Brain Anterior Caudate	brain
25	chr15:75200200-75206400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr15:75200200-75206400	Weak transcription	Brain Angular Gyrus	brain
27	chr15:75200200-75207000	Weak transcription	Colonic Mucosa	Colon
28	chr15:75200200-75207000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:75200200-75207000	Weak transcription	Spleen	Spleen
30	chr15:75200200-75207000	Weak transcription	HUVEC	blood vessel
31	chr15:75200200-75207200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:75200200-75207400	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:75200200-75207600	Weak transcription	Fetal Lung	lung
34	chr15:75200200-75208800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:75200200-75209800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:75200200-75209800	Weak transcription	HepG2	liver
37	chr15:75200200-75209800	Weak transcription	HMEC	breast
38	chr15:75200200-75210800	Weak transcription	Fetal Brain Male	brain
39	chr15:75200200-75211000	Weak transcription	NHDF-Ad	bronchial
40	chr15:75200400-75204400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr15:75200400-75205600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:75200400-75207000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:75200400-75207000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:75200400-75207000	Weak transcription	Dnd41	blood
45	chr15:75200400-75207400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:75200400-75207600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr15:75200400-75211000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:75200400-75211400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:75200400-75211400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr15:75200400-75221200	Weak transcription	Fetal Heart	heart

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