Variant report

Variant	rs55784158
Chromosome Location	chr4:141794469-141794470
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10519565	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12499698	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12507690	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12509724	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12640427	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12641776	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642343	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12649599	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2129645	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220344	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4481296	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4956335	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4956488	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55761420	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56135301	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58594074	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59222460	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60124370	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62344966	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62344969	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62344971	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62344995	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62344996	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62344997	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6811265	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6819107	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6829424	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6829449	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6834848	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6835056	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72722313	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9799616	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1845859	chr4:141786475-141816657	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141778400-141796000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:141778400-141797600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:141778600-141798000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:141781800-141796400	Weak transcription	Fetal Brain Male	brain
5	chr4:141782600-141795000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:141784000-141796400	Weak transcription	Fetal Brain Female	brain
7	chr4:141787400-141795400	Weak transcription	Brain Angular Gyrus	brain
8	chr4:141787400-141796400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:141789600-141795800	Weak transcription	Psoas Muscle	Psoas
10	chr4:141789600-141797200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:141789600-141797200	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:141789600-141831600	Weak transcription	Aorta	Aorta
13	chr4:141791800-141796800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:141792000-141795400	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:141792000-141796400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:141792000-141796400	Weak transcription	Brain Germinal Matrix	brain
17	chr4:141792000-141797600	Weak transcription	Left Ventricle	heart
18	chr4:141792000-141797600	Weak transcription	Ovary	ovary
19	chr4:141792000-141797600	Weak transcription	Right Atrium	heart
20	chr4:141792000-141798800	Weak transcription	Right Ventricle	heart
21	chr4:141792000-141802800	Weak transcription	Gastric	stomach
22	chr4:141793000-141796400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:141793000-141797000	Weak transcription	Fetal Stomach	stomach
24	chr4:141793200-141797200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:141793400-141794600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr4:141793800-141797600	Weak transcription	Adipose Nuclei	Adipose
27	chr4:141794000-141794600	Enhancers	Fetal Lung	lung
28	chr4:141794000-141795200	Weak transcription	Fetal Heart	heart
29	chr4:141794400-141795800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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