Variant report

Variant	rs55785812
Chromosome Location	chr9:8561125-8561126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10977204	0.97[EUR][1000 genomes]
rs10977209	0.84[EUR][1000 genomes]
rs12004302	0.87[EUR][1000 genomes]
rs12004691	0.95[EUR][1000 genomes]
rs12006485	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1323582	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16928124	0.90[ASN][1000 genomes]
rs4742522	0.82[EUR][1000 genomes]
rs58733780	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58948334	0.86[EUR][1000 genomes]
rs61027185	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73430464	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73640929	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73640931	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1026208	chr9:8534915-8595338	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8534600-8564000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:8553000-8561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:8553600-8571000	Weak transcription	Brain Anterior Caudate	brain
4	chr9:8556000-8561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:8556200-8571200	Weak transcription	Ovary	ovary
6	chr9:8556400-8568200	Weak transcription	Brain Substantia Nigra	brain
7	chr9:8556600-8570600	Weak transcription	Fetal Lung	lung
8	chr9:8557200-8561400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:8557400-8575200	Weak transcription	Fetal Kidney	kidney
10	chr9:8558600-8571000	Weak transcription	Pancreas	Pancrea
11	chr9:8559000-8564200	Weak transcription	Fetal Stomach	stomach
12	chr9:8559400-8561600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:8559600-8561800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:8559800-8562200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:8559800-8567200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:8560200-8561400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:8560600-8561200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr9:8560600-8561200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr9:8560600-8561200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:8560600-8561200	Enhancers	Fetal Heart	heart
21	chr9:8560600-8561400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:8560600-8561600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:8560600-8561600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:8560600-8561600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr9:8560600-8561600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr9:8560800-8561400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:8561000-8561400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr9:8561000-8561600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:8561000-8561600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:8561000-8561600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:8561000-8561800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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