Variant report

Variant	rs557870542
Chromosome Location	chr6:80881621-80881622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80879254..80880915-chr6:80881613..80884278,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv524214	chr6:80853873-80892427	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80836400-80891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:80837000-80895200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:80839200-80889600	Weak transcription	Lung	lung
4	chr6:80841200-80895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:80842200-80914200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:80853800-80891800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:80855200-80907000	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:80855200-80907200	Weak transcription	Ovary	ovary
9	chr6:80855400-80886200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:80855400-80895400	Weak transcription	Fetal Stomach	stomach
11	chr6:80855800-80896000	Weak transcription	Aorta	Aorta
12	chr6:80863200-80907200	Weak transcription	Psoas Muscle	Psoas
13	chr6:80868600-80891200	Weak transcription	Pancreas	Pancrea
14	chr6:80870200-80884200	Weak transcription	Left Ventricle	heart
15	chr6:80870800-80886400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:80871400-80895800	Weak transcription	Right Ventricle	heart
17	chr6:80872000-80883000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:80873800-80883000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:80873800-80883000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:80874000-80882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:80874000-80884800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:80874000-80891000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:80874000-80894000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:80874200-80884400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:80874200-80887600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:80874200-80888400	Weak transcription	Fetal Intestine Large	intestine
27	chr6:80874200-80899200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:80874600-80886200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:80875000-80881800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:80875000-80891200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:80875200-80883000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:80875200-80884600	Weak transcription	Primary T cells from cord blood	blood
33	chr6:80875200-80886400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:80875200-80893200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:80875400-80883000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:80875400-80883600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:80875400-80885000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:80875400-80891200	Weak transcription	Hela-S3	cervix
39	chr6:80875600-80882000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:80875600-80884800	Weak transcription	HUVEC	blood vessel
41	chr6:80875600-80891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:80875800-80884200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:80875800-80884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:80875800-80884800	Weak transcription	NHDF-Ad	bronchial
45	chr6:80875800-80885000	Weak transcription	HSMMtube	muscle
46	chr6:80875800-80885200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:80875800-80891200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:80876000-80884000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:80876000-80884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:80877200-80882000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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