Variant report

Variant	rs55787225
Chromosome Location	chr8:119398368-119398369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10086119	0.99[ASN][1000 genomes]
rs10955873	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11774073	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11785720	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11786582	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11992702	0.99[ASN][1000 genomes]
rs12675253	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12675261	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12678322	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679535	0.83[EUR][1000 genomes]
rs17828843	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17828909	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3802189	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3802190	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4876812	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4876815	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4876818	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56094074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62532688	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62532690	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62532691	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62532692	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62532693	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62533396	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62533397	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119359600-119398600	Weak transcription	Lung	lung
2	chr8:119383000-119399400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:119385200-119399000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:119387200-119399800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr8:119390400-119404000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:119391600-119399000	Weak transcription	Aorta	Aorta
7	chr8:119392600-119398800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:119394400-119399000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:119394800-119400200	Enhancers	Liver	Liver
10	chr8:119394800-119402600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:119396400-119398800	Weak transcription	Pancreas	Pancrea
12	chr8:119397400-119398800	Enhancers	HUVEC	blood vessel
13	chr8:119397600-119399400	Enhancers	Fetal Intestine Large	intestine
14	chr8:119398000-119399000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:119398200-119398600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:119398200-119398800	Enhancers	GM12878-XiMat	blood

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