Variant report

Variant	rs557876149
Chromosome Location	chr3:59800958-59800959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv460563	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590383	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv876837	chr3:59800539-59842644	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59770400-59825200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr3:59778200-59811200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr3:59787200-59802000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr3:59796000-59804000	Weak transcription	Right Atrium	heart
5	chr3:59796200-59803000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:59796400-59801600	Weak transcription	Dnd41	blood
7	chr3:59796800-59801400	Weak transcription	Primary T cells from cord blood	blood
8	chr3:59796800-59803000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:59796800-59803600	Weak transcription	Fetal Stomach	stomach
10	chr3:59797000-59803000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:59797000-59803000	Weak transcription	Brain Anterior Caudate	brain
12	chr3:59797000-59803600	Weak transcription	Brain Angular Gyrus	brain
13	chr3:59797000-59803600	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:59797000-59803600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:59797000-59803800	Weak transcription	Right Ventricle	heart
16	chr3:59797200-59803000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:59797200-59804000	Weak transcription	Fetal Lung	lung
18	chr3:59797800-59803000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:59798200-59802200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr3:59798200-59803400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:59798200-59803400	Weak transcription	HSMMtube	muscle
22	chr3:59798400-59801800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:59798600-59803000	Weak transcription	Osteobl	bone
24	chr3:59798600-59803600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:59798800-59803400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:59799000-59802600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr3:59799000-59803000	Weak transcription	HSMM	muscle
28	chr3:59799200-59801800	Weak transcription	HMEC	breast
29	chr3:59799200-59802600	Weak transcription	NH-A	brain
30	chr3:59799200-59802800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:59799600-59801800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:59799600-59801800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:59799600-59801800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:59799600-59802200	Weak transcription	Fetal Brain Female	brain
35	chr3:59799600-59802400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:59799600-59803000	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:59799600-59803000	Weak transcription	Psoas Muscle	Psoas
38	chr3:59799600-59803400	Weak transcription	Brain Germinal Matrix	brain
39	chr3:59799600-59803600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr3:59799800-59801800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr3:59799800-59803000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:59799800-59803000	Weak transcription	Left Ventricle	heart
43	chr3:59799800-59803400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr3:59799800-59803400	Weak transcription	Fetal Heart	heart
45	chr3:59799800-59803800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr3:59800000-59801800	Weak transcription	Fetal Brain Male	brain
47	chr3:59800000-59803400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr3:59800800-59801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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