Variant report

Variant	rs55788930
Chromosome Location	chr9:139872712-139872713
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr9:139872676-139872827	K562	blood:	n/a	n/a
2	POLR2A	chr9:139872237-139872893	A549	lung:	n/a	n/a
3	SP4	chr9:139872554-139873451	H1-hESC	embryonic stem cell:	n/a	chr9:139872980-139872991 chr9:139872831-139872847 chr9:139872962-139872973 chr9:139873033-139873044 chr9:139873018-139873029
4	POLR2A	chr9:139872509-139872912	ECC-1	luminal epithelium:	n/a	n/a
5	MAX	chr9:139872384-139872920	K562	blood:	n/a	chr9:139872395-139872404
6	CCNT2	chr9:139872596-139872954	K562	blood:	n/a	n/a
7	ZBTB7A	chr9:139872404-139873852	K562	blood:	n/a	chr9:139872433-139872444
8	TEAD4	chr9:139872478-139872973	ECC-1	luminal epithelium:	n/a	n/a
9	POLR2A	chr9:139872584-139872884	SK-N-MC	brain:	n/a	n/a
10	HDAC2	chr9:139872548-139872883	K562	blood:	n/a	chr9:139872658-139872677
11	HEY1	chr9:139872550-139872860	K562	blood:	n/a	n/a
12	EGR1	chr9:139872508-139872970	K562	blood:	n/a	chr9:139872519-139872528 chr9:139872767-139872780
13	TEAD4	chr9:139872441-139872920	ECC-1	luminal epithelium:	n/a	n/a
14	UBTF	chr9:139872688-139872845	K562	blood:	n/a	n/a
15	ZBTB7A	chr9:139872379-139872914	K562	blood:	n/a	chr9:139872433-139872444
16	EGR1	chr9:139872566-139872920	ECC-1	luminal epithelium:	n/a	chr9:139872767-139872780
17	JUND	chr9:139872695-139872838	H1-hESC	embryonic stem cell:	n/a	n/a
18	CBX3	chr9:139872642-139872903	K562	blood:	n/a	n/a
19	E2F6	chr9:139872518-139872922	A549	lung:	n/a	n/a
20	CTCF	chr9:139872631-139872880	K562	blood:	n/a	chr9:139872841-139872859
21	MAX	chr9:139872328-139873176	K562	blood:	n/a	chr9:139872395-139872404
22	TEAD4	chr9:139872345-139872912	H1-hESC	embryonic stem cell:	n/a	n/a
23	MAZ	chr9:139871588-139873387	IMR90	lung:	n/a	chr9:139871811-139871820 chr9:139872395-139872404
24	POLR2A	chr9:139872524-139872934	K562	blood:	n/a	n/a
25	TEAD4	chr9:139872594-139872866	K562	blood:	n/a	n/a
26	HCFC1	chr9:139872653-139872770	K562	blood:	n/a	n/a
27	MYC	chr9:139872603-139872886	K562	blood:	n/a	n/a
28	TEAD4	chr9:139872455-139872952	H1-hESC	embryonic stem cell:	n/a	n/a
29	MAX	chr9:139872285-139873031	A549	lung:	n/a	chr9:139872395-139872404
30	RCOR1	chr9:139872531-139872783	K562	blood:	n/a	n/a
31	ZBTB7A	chr9:139872204-139873010	ECC-1	luminal epithelium:	n/a	chr9:139872433-139872444
32	BHLHE40	chr9:139872420-139872841	K562	blood:	n/a	n/a
33	MAX	chr9:139872350-139872940	ECC-1	luminal epithelium:	n/a	chr9:139872395-139872404
34	MAZ	chr9:139872698-139872723	HepG2	liver:	n/a	n/a
35	SP1	chr9:139872556-139873292	A549	lung:	n/a	chr9:139872771-139872783 chr9:139872684-139872693 chr9:139872980-139872991 chr9:139872833-139872845 chr9:139872834-139872844 chr9:139872772-139872781 chr9:139872833-139872845 chr9:139872962-139872973 chr9:139872834-139872844 chr9:139873033-139873044 chr9:139873018-139873029 chr9:139872771-139872783
36	GABPA	chr9:139871999-139872809	H1-hESC	embryonic stem cell:	n/a	chr9:139872624-139872633
37	POLR2A	chr9:139872674-139872863	A549	lung:	n/a	n/a
38	HMGN3	chr9:139872382-139872877	K562	blood:	n/a	n/a
39	RAD21	chr9:139872361-139872850	ECC-1	luminal epithelium:	n/a	n/a
40	NFIC	chr9:139872481-139872996	ECC-1	luminal epithelium:	n/a	n/a
41	TCF12	chr9:139872487-139872990	ECC-1	luminal epithelium:	n/a	chr9:139872701-139872709
42	MAX	chr9:139872339-139872944	ECC-1	luminal epithelium:	n/a	chr9:139872395-139872404
43	TEAD4	chr9:139872480-139872877	K562	blood:	n/a	n/a
44	NR2F2	chr9:139872476-139872916	K562	blood:	n/a	n/a
45	ZNF143	chr9:139872525-139872821	H1-hESC	embryonic stem cell:	n/a	n/a
46	E2F6	chr9:139872450-139872866	K562	blood:	n/a	n/a
47	SP1	chr9:139872699-139873288	A549	lung:	n/a	chr9:139872771-139872783 chr9:139872980-139872991 chr9:139872833-139872845 chr9:139872834-139872844 chr9:139872772-139872781 chr9:139872833-139872845 chr9:139872962-139872973 chr9:139872834-139872844 chr9:139873033-139873044 chr9:139873018-139873029 chr9:139872771-139872783
48	YY1	chr9:139872469-139872937	K562	blood:	n/a	chr9:139872775-139872784
49	POLR2A	chr9:139872608-139872874	ECC-1	luminal epithelium:	n/a	n/a
50	E2F6	chr9:139872551-139872737	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139837395..139841047-chr9:139870338..139873414,3	MCF-7	breast:
2	chr9:139871065..139875478-chr9:139913378..139917621,6	K562	blood:
3	chr9:139870625..139872878-chr9:140098615..140100472,2	K562	blood:
4	chr9:139700783..139704269-chr9:139871930..139874746,3	MCF-7	breast:
5	chr9:139837737..139839600-chr9:139871681..139874373,2	K562	blood:
6	chr9:139872018..139873607-chr9:139920682..139923548,2	K562	blood:
7	chr9:139869140..139871769-chr9:139871885..139873723,2	MCF-7	breast:
8	chr9:139683825..139687268-chr9:139871414..139874835,3	K562	blood:
9	chr1:203274337..203274841-chr9:139872600..139873120,2	MCF-7	breast:
10	chr9:139871316..139873817-chr9:140134381..140137314,2	K562	blood:
11	chr9:139844664..139846900-chr9:139871545..139874035,2	K562	blood:
12	chr9:139842583..139844797-chr9:139871048..139874823,3	MCF-7	breast:
13	chr9:139871397..139874309-chr9:139943937..139946051,2	K562	blood:
14	chr9:139871578..139873267-chr9:139915233..139918158,2	K562	blood:

Variant related genes	Relation type
PTGDS	TF binding region
LCNL1	TF binding region
ENSG00000054179	Chromatin interaction
ENSG00000159388	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000176058	Chromatin interaction
ENSG00000188566	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000184925	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000238268	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000233791	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000228544	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000187713	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17243711	1.00[AMR][1000 genomes]
rs17243928	1.00[AMR][1000 genomes]
rs17244159	1.00[AMR][1000 genomes]
rs57728010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73668379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73668380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:94 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
10	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
11	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
12	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
13	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
14	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
15	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
16	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
17	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
18	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
19	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
20	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
21	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
22	nsv894483	chr9:139709976-139963091	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	119 gene(s)	inside rSNPs	diseases
23	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
24	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
25	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
26	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
27	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
28	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
29	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
30	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
31	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
32	nsv894500	chr9:139823670-139930945	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
33	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
34	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
35	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
36	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
37	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
38	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
39	nsv894507	chr9:139860264-139995065	Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
40	nsv894508	chr9:139860631-139875642	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
41	nsv894509	chr9:139860631-139876471	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
42	nsv894510	chr9:139860631-139878317	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
43	nsv894511	chr9:139860631-139885820	Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
44	nsv894512	chr9:139860631-139894734	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
45	nsv894513	chr9:139860631-139904037	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
46	nsv894514	chr9:139860631-139943112	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	79 gene(s)	inside rSNPs	diseases
47	nsv894515	chr9:139860631-139963091	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
48	nsv894517	chr9:139860631-139977351	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
49	nsv894516	chr9:139860631-139979276	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
50	nsv894518	chr9:139860631-139995065	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139868200-139873000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:139871600-139872800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:139871600-139872800	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr9:139871600-139873000	Bivalent/Poised TSS	Thymus	Thymus
5	chr9:139871800-139872800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:139871800-139872800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr9:139871800-139872800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:139871800-139872800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:139871800-139872800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr9:139871800-139872800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:139871800-139872800	Flanking Active TSS	Placenta	Placenta
12	chr9:139871800-139872800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
13	chr9:139871800-139873000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:139871800-139873000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:139871800-139873000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr9:139871800-139873000	Bivalent/Poised TSS	Fetal Brain Female	brain
17	chr9:139871800-139873400	Active TSS	Brain Substantia Nigra	brain
18	chr9:139871800-139873600	Active TSS	Brain Anterior Caudate	brain
19	chr9:139871800-139873600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:139872000-139872800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr9:139872000-139872800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:139872000-139872800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr9:139872000-139872800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:139872000-139872800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:139872000-139872800	Flanking Active TSS	Colonic Mucosa	Colon
26	chr9:139872000-139872800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
27	chr9:139872000-139872800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
28	chr9:139872000-139872800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr9:139872000-139872800	Active TSS	Rectal Smooth Muscle	rectum
30	chr9:139872000-139872800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
31	chr9:139872000-139873000	Bivalent Enhancer	Fetal Brain Male	brain
32	chr9:139872000-139873000	Enhancers	Gastric	stomach
33	chr9:139872000-139873000	Flanking Active TSS	Lung	lung
34	chr9:139872000-139873000	Flanking Active TSS	Right Ventricle	heart
35	chr9:139872000-139873600	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr9:139872000-139873600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:139872000-139873800	Active TSS	H9 Cell Line	embryonic stem cell
38	chr9:139872200-139872800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr9:139872200-139872800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr9:139872200-139872800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr9:139872200-139872800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:139872200-139872800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr9:139872200-139872800	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr9:139872200-139872800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr9:139872200-139872800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:139872200-139872800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:139872200-139872800	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
48	chr9:139872200-139872800	Active TSS	Placenta Amnion	Placenta Amnion
49	chr9:139872200-139872800	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr9:139872200-139872800	Flanking Active TSS	Stomach Smooth Muscle	stomach

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