Variant report

Variant	rs55789907
Chromosome Location	chr11:46004589-46004590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46002933..46004911-chr11:46139730..46142231,2	K562	blood:
2	chr11:45942896..45944721-chr11:46003049..46005001,2	K562	blood:
3	chr11:46000949..46006706-chr11:46011674..46018213,17	K562	blood:
4	chr11:45869552..45871506-chr11:46003139..46005373,2	K562	blood:
5	chr11:45987934..45989618-chr11:46004381..46006271,2	K562	blood:
6	chr11:45990331..45993127-chr11:46002263..46005168,2	K562	blood:
7	chr11:45998746..46001549-chr11:46002921..46008009,7	K562	blood:
8	chr11:45997750..46001916-chr11:46003160..46008009,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000165905	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv972947	chr11:46004497-46007589	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:45987600-46004600	Weak transcription	Gastric	stomach
3	chr11:45992800-46004600	Weak transcription	Fetal Kidney	kidney
4	chr11:45993000-46004600	Weak transcription	Esophagus	oesophagus
5	chr11:45993000-46004600	Weak transcription	Spleen	Spleen
6	chr11:45993000-46015000	Weak transcription	Psoas Muscle	Psoas
7	chr11:45993000-46017600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:45993600-46004600	Weak transcription	Small Intestine	intestine
9	chr11:46000200-46004600	Weak transcription	HepG2	liver
10	chr11:46000400-46013000	Weak transcription	Fetal Intestine Large	intestine
11	chr11:46000600-46010400	Weak transcription	Hela-S3	cervix
12	chr11:46000800-46006200	Enhancers	Fetal Heart	heart
13	chr11:46000800-46010200	Weak transcription	Liver	Liver
14	chr11:46000800-46012400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:46001000-46015400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:46001200-46004800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr11:46001400-46004600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:46001400-46004600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:46001400-46004600	Weak transcription	Fetal Intestine Small	intestine
20	chr11:46001400-46013200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:46001400-46013600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:46001400-46015200	Weak transcription	Pancreas	Pancrea
23	chr11:46001400-46016000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:46001600-46004600	Weak transcription	Placenta	Placenta
26	chr11:46001600-46004600	Weak transcription	Lung	lung
27	chr11:46001600-46005000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:46001600-46006800	Weak transcription	Thymus	Thymus
29	chr11:46001600-46007200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:46001600-46015200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr11:46001600-46015400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:46001600-46016400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:46001600-46021000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:46002000-46004600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:46002000-46004800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:46002000-46015000	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:46002000-46025000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:46002000-46042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:46002200-46004600	Weak transcription	Right Ventricle	heart
41	chr11:46002200-46005000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr11:46002200-46024800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:46002200-46025000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr11:46002400-46005200	Weak transcription	Primary T cells from cord blood	blood
45	chr11:46002600-46004600	Weak transcription	Left Ventricle	heart
46	chr11:46002600-46005800	Weak transcription	Primary B cells from cord blood	blood
47	chr11:46002600-46012000	Weak transcription	GM12878-XiMat	blood
48	chr11:46002600-46023200	Weak transcription	Primary B cells from peripheral blood	blood
49	chr11:46003000-46005000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:46003000-46005200	Enhancers	Brain Hippocampus Middle	brain

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