Variant report

Variant	rs55789946
Chromosome Location	chr1:166914640-166914641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332845	chr1:166913225-166914648	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166891000-166916400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:166905800-166915200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:166912800-166915400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:166912800-166915400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:166912800-166915400	Enhancers	Dnd41	blood
6	chr1:166912800-166916000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:166913000-166916200	Enhancers	Brain Germinal Matrix	brain
8	chr1:166913000-166916400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:166913000-166916400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:166913000-166922200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr1:166913400-166915200	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:166913400-166915200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr1:166913400-166915200	Enhancers	Fetal Thymus	thymus
14	chr1:166913400-166915400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:166913400-166922000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:166913600-166914800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr1:166913600-166915200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr1:166913800-166916400	Enhancers	Brain Angular Gyrus	brain
19	chr1:166914000-166915000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:166914000-166915800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr1:166914000-166916000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr1:166914000-166916400	Enhancers	Brain Anterior Caudate	brain
23	chr1:166914000-166916400	Enhancers	Brain Hippocampus Middle	brain
24	chr1:166914000-166916400	Enhancers	Brain Substantia Nigra	brain
25	chr1:166914000-166923000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:166914200-166915000	Weak transcription	Fetal Brain Female	brain
27	chr1:166914200-166915000	Enhancers	HSMMtube	muscle
28	chr1:166914200-166915200	Enhancers	HSMM	muscle
29	chr1:166914200-166916200	Bivalent Enhancer	NH-A	brain
30	chr1:166914200-166916400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:166914200-166916600	Weak transcription	Esophagus	oesophagus
32	chr1:166914200-166916600	Weak transcription	Right Atrium	heart
33	chr1:166914400-166914800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:166914400-166915800	Weak transcription	Fetal Brain Male	brain
35	chr1:166914600-166915000	Enhancers	Primary T cells from cord blood	blood
36	chr1:166914600-166915400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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