Variant report

Variant	rs557911875
Chromosome Location	chr17:19437358-19437359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19435840..19438479-chr17:19458086..19460035,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000142494	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428337	chr17:19340045-19585774	Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	esv3335342	chr17:19436410-19438558	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19436400-19437800	Bivalent/Poised TSS	NHEK	skin
2	chr17:19436400-19438000	Bivalent Enhancer	Fetal Brain Male	brain
3	chr17:19436400-19438200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr17:19436400-19438400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr17:19436400-19438400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
6	chr17:19436600-19437400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
7	chr17:19436600-19437400	Active TSS	NHDF-Ad	bronchial
8	chr17:19436600-19437600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr17:19436600-19437600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr17:19436600-19437600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr17:19436600-19437800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr17:19436600-19437800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
13	chr17:19436600-19437800	Active TSS	Colon Smooth Muscle	Colon
14	chr17:19436600-19437800	Active TSS	Rectal Smooth Muscle	rectum
15	chr17:19436600-19438000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr17:19436600-19438000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr17:19436600-19438000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:19436600-19438000	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr17:19436600-19438000	Active TSS	Brain Substantia Nigra	brain
20	chr17:19436600-19438000	Active TSS	Fetal Kidney	kidney
21	chr17:19436600-19438200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr17:19436600-19438200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
23	chr17:19436600-19438200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:19436600-19438200	Active TSS	Psoas Muscle	Psoas
25	chr17:19436800-19437400	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr17:19436800-19437400	Bivalent/Poised TSS	Fetal Lung	lung
27	chr17:19436800-19437600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr17:19436800-19437600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr17:19436800-19437600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
30	chr17:19436800-19437600	Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr17:19436800-19437600	Bivalent/Poised TSS	NH-A	brain
32	chr17:19436800-19437600	Active TSS	Osteobl	bone
33	chr17:19436800-19437800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr17:19436800-19437800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr17:19436800-19437800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr17:19436800-19437800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr17:19436800-19437800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr17:19436800-19437800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr17:19436800-19437800	Active TSS	Brain Angular Gyrus	brain
40	chr17:19436800-19437800	Active TSS	Right Atrium	heart
41	chr17:19436800-19437800	Active TSS	A549	lung
42	chr17:19436800-19437800	Flanking Bivalent TSS/Enh	HMEC	breast
43	chr17:19436800-19438000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
44	chr17:19436800-19438000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
45	chr17:19436800-19438000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
46	chr17:19436800-19438000	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr17:19436800-19438000	Bivalent Enhancer	Primary B cells from cord blood	blood
48	chr17:19436800-19438000	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr17:19436800-19438000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
50	chr17:19436800-19438000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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