Variant report

Variant	rs557915039
Chromosome Location	chr19:35780244-35780245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35778338..35780262-chr19:35804621..35807184,2	MCF-7	breast:
2	chr19:35776981..35780325-chr19:35781978..35784871,3	MCF-7	breast:
3	chr19:35779735..35782128-chr19:35802752..35804567,2	MCF-7	breast:
4	chr19:35778229..35780578-chr19:35810111..35812060,2	K562	blood:
5	chr19:35775844..35777414-chr19:35778396..35780785,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105695	Chromatin interaction
ENSG00000012124	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv911618	chr19:35734107-35807845	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	esv1836312	chr19:35741456-35786868	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	n/a
9	nsv512581	chr19:35779561-35781562	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35768400-35781400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:35768800-35781400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:35772000-35781200	Weak transcription	Brain Substantia Nigra	brain
4	chr19:35774800-35809600	Weak transcription	Right Atrium	heart
5	chr19:35775400-35782600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr19:35776000-35781200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr19:35776200-35781400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr19:35776200-35781400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr19:35776200-35781600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr19:35776200-35781600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:35776200-35784200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr19:35776200-35786400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr19:35776400-35781200	Weak transcription	Brain Anterior Caudate	brain
14	chr19:35776400-35781400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr19:35778600-35783400	Weak transcription	Fetal Lung	lung
16	chr19:35779800-35780400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr19:35780000-35780600	Enhancers	Brain Angular Gyrus	brain
18	chr19:35780000-35780600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr19:35780000-35780600	Enhancers	Hela-S3	cervix
20	chr19:35780000-35780800	Enhancers	Brain Hippocampus Middle	brain
21	chr19:35780200-35780400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr19:35780200-35780400	Enhancers	K562	blood
23	chr19:35780200-35781200	Bivalent Enhancer	HepG2	liver

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