Variant report

Variant	rs557915166
Chromosome Location	chr7:17854524-17854525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:17853678..17855376-chr7:17978755..17981532,2	MCF-7	breast:
2	chr7:17853387..17855220-chr7:17856862..17859241,2	K562	blood:
3	chr7:17853768..17855990-chr7:17915652..17917897,2	K562	blood:

Variant related genes	Relation type
ENSG00000071189	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869352	chr7:17237983-17932878	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1021524	chr7:17251148-17963307	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1021289	chr7:17254117-17873816	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv538754	chr7:17254117-17873816	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv534309	chr7:17254118-17932878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv533938	chr7:17254118-18040301	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv887804	chr7:17571140-17885468	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
9	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
10	esv1802979	chr7:17816528-17908546	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv830913	chr7:17848480-18034218	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	esv1792752	chr7:17853983-17908546	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:17812600-17887600	Weak transcription	Gastric	stomach
2	chr7:17813600-17879200	Weak transcription	HSMMtube	muscle
3	chr7:17817400-17887600	Weak transcription	Pancreas	Pancrea
4	chr7:17823600-17887600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:17824800-17861800	Weak transcription	Fetal Heart	heart
6	chr7:17825800-17887600	Weak transcription	Colonic Mucosa	Colon
7	chr7:17826400-17864000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:17827400-17877600	Weak transcription	Small Intestine	intestine
9	chr7:17832000-17862600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:17832000-17880600	Weak transcription	GM12878-XiMat	blood
11	chr7:17834000-17887800	Weak transcription	Right Ventricle	heart
12	chr7:17834200-17879400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr7:17834800-17888800	Weak transcription	Brain Substantia Nigra	brain
14	chr7:17837800-17855400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:17838800-17887600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:17839000-17932600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:17841000-17861000	Weak transcription	NHDF-Ad	bronchial
18	chr7:17841000-17862000	Weak transcription	HUVEC	blood vessel
19	chr7:17841200-17883800	Weak transcription	HMEC	breast
20	chr7:17841200-17902600	Weak transcription	Brain Anterior Caudate	brain
21	chr7:17841400-17862200	Weak transcription	NH-A	brain
22	chr7:17841400-17862200	Weak transcription	NHEK	skin
23	chr7:17841400-17862800	Weak transcription	Stomach Mucosa	stomach
24	chr7:17841600-17879400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:17843200-17881800	Weak transcription	A549	lung
26	chr7:17843400-17864000	Weak transcription	Osteobl	bone
27	chr7:17843400-17864600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:17843400-17879200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr7:17846000-17900600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:17847400-17854800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:17847400-17862200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:17847400-17879000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:17847400-17880600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:17847400-17887600	Weak transcription	Ovary	ovary
35	chr7:17847400-17887600	Weak transcription	Spleen	Spleen
36	chr7:17847600-17887600	Weak transcription	Fetal Stomach	stomach
37	chr7:17847800-17862200	Weak transcription	Fetal Intestine Large	intestine
38	chr7:17847800-17864200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr7:17851400-17865400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr7:17852000-17855600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr7:17852000-17855800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:17852200-17854600	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:17852200-17855200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:17852200-17856000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:17852400-17854800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr7:17852400-17855200	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr7:17852400-17855800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:17852400-17856200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr7:17852400-17856400	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr7:17852600-17854600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links