Variant report

Variant	rs55792268
Chromosome Location	chr6:121586646-121586647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13437445	1.00[AMR][1000 genomes]
rs28409342	1.00[AMR][1000 genomes]
rs55698734	1.00[AMR][1000 genomes]
rs56208506	1.00[AMR][1000 genomes]
rs57914518	1.00[AMR][1000 genomes]
rs6926868	1.00[AMR][1000 genomes]
rs73716930	1.00[AMR][1000 genomes]
rs7741331	1.00[AMR][1000 genomes]
rs9501791	1.00[AMR][1000 genomes]
rs9501792	1.00[AMR][1000 genomes]
rs9503075	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121567200-121588000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:121573800-121587000	Weak transcription	Fetal Kidney	kidney
3	chr6:121575000-121606400	Weak transcription	NH-A	brain
4	chr6:121581000-121589200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:121581200-121588000	Weak transcription	Aorta	Aorta
6	chr6:121582000-121588400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:121582000-121589000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:121582200-121588000	Weak transcription	Pancreas	Pancrea
9	chr6:121582200-121603400	Weak transcription	HSMMtube	muscle
10	chr6:121582400-121588000	Weak transcription	Placenta	Placenta
11	chr6:121582400-121588200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:121582400-121588400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:121582400-121590400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:121582600-121587800	Weak transcription	Ovary	ovary
15	chr6:121582600-121588000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:121582600-121588400	Weak transcription	Gastric	stomach
17	chr6:121582600-121588400	Weak transcription	Left Ventricle	heart
18	chr6:121582800-121587800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:121582800-121587800	Weak transcription	Fetal Intestine Small	intestine
20	chr6:121582800-121588000	Weak transcription	Fetal Stomach	stomach
21	chr6:121584200-121588200	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr6:121585200-121587800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:121585400-121588000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:121585400-121590400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:121585400-121614200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:121585600-121588200	Weak transcription	Dnd41	blood
27	chr6:121585600-121588800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:121585600-121625000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:121585800-121588400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:121585800-121599000	Weak transcription	Primary B cells from cord blood	blood
31	chr6:121586400-121655000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:121586600-121588400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:121586600-121613000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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