Variant report

Variant	rs557926126
Chromosome Location	chr6:30379698-30379699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv884063	chr6:30366100-30397219	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv462742	chr6:30372570-30410206	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv601477	chr6:30372570-30410206	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv884064	chr6:30375290-30396173	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30379400-30379800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:30379400-30379800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:30379400-30379800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr6:30379400-30379800	Bivalent Enhancer	Primary T cells from cord blood	blood
5	chr6:30379400-30379800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr6:30379400-30379800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
7	chr6:30379400-30379800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:30379400-30379800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:30379400-30379800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
10	chr6:30379400-30379800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:30379400-30379800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:30379400-30379800	Bivalent Enhancer	Psoas Muscle	Psoas
13	chr6:30379400-30380000	Enhancers	Pancreas	Pancrea
14	chr6:30379600-30379800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr6:30379600-30379800	Bivalent/Poised TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:30379600-30379800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
17	chr6:30379600-30379800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:30379600-30379800	Flanking Active TSS	HepG2	liver
19	chr6:30379600-30380000	Active TSS	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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