Variant report

Variant	rs557940988
Chromosome Location	chr3:105137173-105137174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105131124..105132764-chr3:105135409..105137743,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877304	chr3:105122214-105198374	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv965389	chr3:105136702-105141255	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105134400-105141400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:105134400-105145400	Weak transcription	Brain Angular Gyrus	brain
3	chr3:105135000-105137200	Enhancers	HUVEC	blood vessel
4	chr3:105135000-105137600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:105135000-105141400	Weak transcription	Brain Anterior Caudate	brain
6	chr3:105135000-105145800	Weak transcription	Brain Substantia Nigra	brain
7	chr3:105135200-105152000	Weak transcription	NH-A	brain
8	chr3:105135400-105137400	Enhancers	Primary B cells from cord blood	blood
9	chr3:105135600-105137400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:105135600-105139400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:105135800-105137200	Enhancers	NHEK	skin
12	chr3:105135800-105137400	Enhancers	Primary hematopoietic stem cells	blood
13	chr3:105135800-105137400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:105135800-105137600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:105136600-105137200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:105136600-105137200	Enhancers	HMEC	breast
17	chr3:105136600-105137200	Enhancers	HSMM	muscle
18	chr3:105136600-105137200	Enhancers	Osteobl	bone
19	chr3:105136600-105137400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr3:105136600-105137400	Enhancers	A549	lung
21	chr3:105136800-105137200	Enhancers	Brain Hippocampus Middle	brain
22	chr3:105136800-105137600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:105137000-105137200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:105137000-105137200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:105137000-105137200	Enhancers	Monocytes-CD14+_RO01746	blood

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