Variant report

Variant	rs557944815
Chromosome Location	chr15:74717659-74717660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74715058..74717919-chr15:74753629..74755415,2	K562	blood:
2	chr15:74709055..74711069-chr15:74716225..74718265,2	MCF-7	breast:
3	chr15:74685612..74687526-chr15:74716877..74719383,2	K562	blood:
4	chr15:74708765..74710665-chr15:74717275..74720280,3	K562	blood:
5	chr15:74716409..74721225-chr15:74724454..74727081,9	K562	blood:

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction
ENSG00000247240	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904354	chr15:74697084-74722924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569974	chr15:74701200-74727113	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904360	chr15:74709071-74728149	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	nsv569979	chr15:74709405-74722924	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv904364	chr15:74709975-74728149	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv569982	chr15:74710125-74721969	Genic enhancers Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv904367	chr15:74710125-74728149	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
12	nsv904368	chr15:74711122-74728149	Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
13	nsv542433	chr15:74714265-74745033	Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv904369	chr15:74716761-74719531	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74707200-74722400	Weak transcription	Fetal Intestine Small	intestine
2	chr15:74707800-74718000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:74708400-74722400	Genic enhancers	Fetal Thymus	thymus
4	chr15:74709200-74720200	Weak transcription	Esophagus	oesophagus
5	chr15:74709200-74720800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:74709200-74724800	Weak transcription	Primary T cells from cord blood	blood
7	chr15:74709400-74718000	Enhancers	HSMMtube	muscle
8	chr15:74709600-74718200	Enhancers	HMEC	breast
9	chr15:74709800-74718000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:74710000-74722800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:74710200-74718200	Enhancers	NHDF-Ad	bronchial
12	chr15:74710200-74718400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:74710200-74722000	Weak transcription	Dnd41	blood
14	chr15:74710400-74718200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:74710400-74721200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:74710400-74722800	Enhancers	Brain Hippocampus Middle	brain
17	chr15:74711000-74718400	Enhancers	Brain Anterior Caudate	brain
18	chr15:74711000-74721000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:74711000-74723200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr15:74711000-74723400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:74711400-74719000	Enhancers	Placenta	Placenta
22	chr15:74711800-74717800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr15:74712400-74718000	Enhancers	Ovary	ovary
24	chr15:74712600-74718200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:74713000-74724000	Weak transcription	Gastric	stomach
26	chr15:74713200-74725000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
27	chr15:74713400-74718000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:74713400-74724400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:74713400-74725200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:74713600-74718600	Enhancers	Brain Substantia Nigra	brain
31	chr15:74714200-74717800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:74714600-74717800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:74715000-74719000	Enhancers	Brain Angular Gyrus	brain
34	chr15:74715000-74722600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr15:74715600-74718200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:74715600-74720200	Weak transcription	Fetal Brain Male	brain
37	chr15:74715600-74724800	Weak transcription	Lung	lung
38	chr15:74715800-74720200	Weak transcription	Colonic Mucosa	Colon
39	chr15:74715800-74721000	Weak transcription	Brain Germinal Matrix	brain
40	chr15:74715800-74721800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr15:74716000-74718800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:74716000-74720400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:74716000-74720800	Weak transcription	Adipose Nuclei	Adipose
44	chr15:74716000-74722000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr15:74716200-74720200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr15:74716200-74723400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:74716200-74724000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:74716200-74724800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:74716200-74725000	Weak transcription	A549	lung
50	chr15:74716400-74718200	Genic enhancers	NH-A	brain

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