Variant report

Variant	rs557945452
Chromosome Location	chr6:11790536-11790537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11782929..11785704-chr6:11787439..11790880,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv12435	chr6:11786468-11791797	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv970076	chr6:11789794-11794413	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11774000-11791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11786000-11791400	Weak transcription	NHEK	skin
3	chr6:11786200-11790600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:11786200-11790800	Weak transcription	HMEC	breast
5	chr6:11786800-11790600	Weak transcription	Lung	lung
6	chr6:11787000-11790600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:11787000-11791400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:11787400-11790800	Weak transcription	Fetal Intestine Large	intestine
9	chr6:11788600-11790800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:11788600-11791000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:11788800-11793000	Weak transcription	GM12878-XiMat	blood
12	chr6:11789000-11790600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:11789600-11791800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:11790400-11790800	Enhancers	Fetal Lung	lung
15	chr6:11790400-11791800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:11790400-11792000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:11790400-11792000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:11790400-11792400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:11790400-11793400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:11790400-11793400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:11790400-11793600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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