Variant report

Variant	rs557952698
Chromosome Location	chr15:92295511-92295512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv570449	chr15:92237795-92334756	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3355403	chr15:92291548-92295946	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1042176	chr15:92294930-92329264	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92293400-92295600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:92293400-92296200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:92294400-92295800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:92294400-92296000	Enhancers	Brain Angular Gyrus	brain
5	chr15:92294400-92296200	Enhancers	Brain Cingulate Gyrus	brain
6	chr15:92294400-92296200	Enhancers	Brain Substantia Nigra	brain
7	chr15:92294400-92297400	Enhancers	Brain Hippocampus Middle	brain
8	chr15:92295000-92295800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:92295000-92295800	Enhancers	Lung	lung
10	chr15:92295000-92296000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:92295000-92296000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:92295000-92296200	Enhancers	Fetal Lung	lung
13	chr15:92295000-92297200	Enhancers	Ovary	ovary
14	chr15:92295200-92295600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:92295200-92295800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:92295400-92295600	Enhancers	Brain Anterior Caudate	brain
17	chr15:92295400-92295600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr15:92295400-92308400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links