Variant report

Variant	rs557957640
Chromosome Location	chr7:126891065-126891066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126884896..126891192-chr7:126891657..126895737,6	K562	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv819682	chr7:126890804-126895155	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126890200-126894400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr7:126890600-126891800	Bivalent Enhancer	GM12878-XiMat	blood
3	chr7:126890600-126892000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:126890600-126892000	Active TSS	Brain Anterior Caudate	brain
5	chr7:126890600-126892400	Active TSS	Brain Substantia Nigra	brain
6	chr7:126890600-126894400	Active TSS	Brain Angular Gyrus	brain
7	chr7:126890800-126891200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
8	chr7:126890800-126891200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:126890800-126891400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
11	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
14	chr7:126890800-126891400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
15	chr7:126890800-126891400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
16	chr7:126890800-126891600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:126890800-126891800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
18	chr7:126890800-126892400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
19	chr7:126890800-126894400	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr7:126891000-126891200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
21	chr7:126891000-126891200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:126891000-126891200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:126891000-126891200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:126891000-126891200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
25	chr7:126891000-126891200	Bivalent Enhancer	Fetal Brain Male	brain
26	chr7:126891000-126891200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
27	chr7:126891000-126891200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
28	chr7:126891000-126891200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
29	chr7:126891000-126891400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
30	chr7:126891000-126891400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:126891000-126891400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
32	chr7:126891000-126891400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
33	chr7:126891000-126891400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
34	chr7:126891000-126891400	Bivalent Enhancer	Primary T cells from cord blood	blood
35	chr7:126891000-126891400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
36	chr7:126891000-126891400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
37	chr7:126891000-126891400	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr7:126891000-126891400	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr7:126891000-126891400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
40	chr7:126891000-126891400	Bivalent Enhancer	Psoas Muscle	Psoas
41	chr7:126891000-126891600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
42	chr7:126891000-126891600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:126891000-126891600	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
44	chr7:126891000-126891600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:126891000-126891600	Enhancers	Pancreas	Pancrea
46	chr7:126891000-126891800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
47	chr7:126891000-126891800	Bivalent Enhancer	Adipose Nuclei	Adipose
48	chr7:126891000-126891800	Bivalent Enhancer	Colon Smooth Muscle	Colon
49	chr7:126891000-126891800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
50	chr7:126891000-126891800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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