Variant report

Variant	rs55796025
Chromosome Location	chr4:91986393-91986394
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73834748	0.90[AFR][1000 genomes]
rs73834750	0.90[AFR][1000 genomes]
rs73834770	1.00[AFR][1000 genomes]
rs73834771	0.90[AFR][1000 genomes]
rs73834774	0.90[AFR][1000 genomes]
rs73834776	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879559	chr4:91918870-92152678	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2757943	chr4:91946664-92146114	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759267	chr4:91946664-92146114	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv10534	chr4:91966600-92009182	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1831682	chr4:91979094-92114281	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91984200-91986400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:91985000-91986400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:91985000-91986400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:91985000-91986400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:91985000-91986400	Enhancers	Fetal Lung	lung
6	chr4:91985200-91986400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:91985200-91986400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:91985200-91986400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:91985200-91987800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:91985400-91986400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:91985400-91986400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:91985400-91986400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:91985600-91986400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:91985600-91986400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:91985600-91986400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:91985600-91987600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:91985800-91986400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:91986000-91986400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:91986000-91986400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:91986000-91986400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:91986000-91990000	Weak transcription	Aorta	Aorta
22	chr4:91986200-91991400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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