Variant report

Variant	rs55798829
Chromosome Location	chr7:102765623-102765624
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102761173..102767210-chr7:102768594..102775189,9	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11487077	1.00[ASN][1000 genomes]
rs14029	1.00[ASN][1000 genomes]
rs56047178	1.00[ASN][1000 genomes]
rs73192058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714541	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
2	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
3	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
4	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
7	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain
10	chr7:102730200-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:102734200-102770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:102736000-102768000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:102738400-102767800	Weak transcription	Pancreas	Pancrea
14	chr7:102738400-102768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:102738400-102773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:102741400-102770600	Weak transcription	HUVEC	blood vessel
17	chr7:102743600-102770200	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:102747200-102768200	Weak transcription	Fetal Heart	heart
19	chr7:102747400-102766400	Weak transcription	Brain Germinal Matrix	brain
20	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:102747600-102768000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:102747600-102768000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:102747600-102775200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:102747600-102789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:102753800-102767200	Weak transcription	Hela-S3	cervix
26	chr7:102754000-102770400	Weak transcription	NHLF	lung
27	chr7:102754200-102766800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:102754200-102773600	Weak transcription	HSMMtube	muscle
29	chr7:102754400-102771800	Weak transcription	NHEK	skin
30	chr7:102755000-102766000	Strong transcription	Primary B cells from cord blood	blood
31	chr7:102755200-102770000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:102755200-102772000	Weak transcription	HMEC	breast
33	chr7:102755400-102767200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:102755400-102768400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:102755600-102768200	Weak transcription	Osteobl	bone
36	chr7:102755600-102775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:102755800-102767800	Weak transcription	NHDF-Ad	bronchial
38	chr7:102757200-102769200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr7:102757400-102769000	Strong transcription	Dnd41	blood
40	chr7:102757600-102766600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:102757600-102769200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:102758600-102769800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr7:102758800-102769200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:102759200-102769200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr7:102759200-102769200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:102759400-102769200	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr7:102759800-102769200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr7:102760200-102769200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:102760200-102770200	Weak transcription	Aorta	Aorta
50	chr7:102760600-102766400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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