Variant report

Variant	rs557989397
Chromosome Location	chr3:112390618-112390619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112358757..112361527-chr3:112390317..112391912,2	K562	blood:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112387000-112391200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:112388000-112395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:112388600-112392200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:112388600-112393200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr3:112388800-112391400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:112388800-112392000	Enhancers	K562	blood
7	chr3:112389000-112391400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:112389000-112391600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:112389000-112392800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:112389000-112393400	Enhancers	Primary T cells from cord blood	blood
11	chr3:112389000-112394000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr3:112389000-112394000	Enhancers	HSMM	muscle
13	chr3:112389200-112391600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:112389200-112391800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:112389200-112392000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:112389200-112392000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr3:112389200-112392200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr3:112389200-112396800	Enhancers	Osteobl	bone
19	chr3:112389400-112391600	Enhancers	NHEK	skin
20	chr3:112389400-112391800	Enhancers	Hela-S3	cervix
21	chr3:112389400-112392200	Enhancers	HMEC	breast
22	chr3:112389400-112392800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:112389600-112395200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr3:112389600-112395800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:112389600-112396200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:112389800-112391400	Enhancers	HSMMtube	muscle
27	chr3:112389800-112394200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:112389800-112395200	Enhancers	NHDF-Ad	bronchial
29	chr3:112390000-112391000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr3:112390000-112391800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr3:112390000-112391800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr3:112390200-112391400	Enhancers	NHLF	lung
33	chr3:112390200-112391800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:112390200-112391800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:112390200-112392000	Enhancers	Placenta	Placenta
36	chr3:112390200-112392400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr3:112390200-112393200	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr3:112390200-112393400	Enhancers	NH-A	brain
39	chr3:112390400-112391000	Enhancers	Small Intestine	intestine
40	chr3:112390400-112391600	Flanking Active TSS	A549	lung
41	chr3:112390400-112391800	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr3:112390400-112392200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:112390400-112392600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:112390400-112393600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:112390400-112395800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:112390600-112391000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:112390600-112391200	Enhancers	Colon Smooth Muscle	Colon
48	chr3:112390600-112391600	Enhancers	Fetal Lung	lung

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