Variant report

Variant	rs55799434
Chromosome Location	chr8:103938999-103939000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103875112..103878223-chr8:103936319..103939684,4	K562	blood:
2	chr8:103937650..103939410-chr8:103943379..103945768,2	MCF-7	breast:
3	chr8:103936331..103939322-chr8:103948640..103950158,2	K562	blood:

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73699345	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv891246	chr8:103928940-103967694	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103927800-103939800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:103927800-103941600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:103931800-103941600	Weak transcription	Fetal Kidney	kidney
4	chr8:103932000-103939400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:103932200-103959400	Weak transcription	Fetal Brain Female	brain
6	chr8:103932400-103939800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:103932800-103939400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:103932800-103939600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:103933000-103939800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:103933400-103940000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:103934800-103941400	Weak transcription	Liver	Liver
12	chr8:103937400-103942000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:103937600-103939600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:103937600-103939600	Weak transcription	Placenta	Placenta
15	chr8:103937600-103939800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:103937600-103941800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr8:103937600-103942000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:103937800-103939200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:103937800-103940200	Enhancers	Ovary	ovary
20	chr8:103937800-103942000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:103937800-103942200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:103937800-103956000	Weak transcription	Brain Hippocampus Middle	brain
23	chr8:103938000-103939000	Enhancers	Osteobl	bone
24	chr8:103938200-103939000	Enhancers	K562	blood
25	chr8:103938200-103939200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:103938200-103939400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:103938200-103939800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:103938200-103939800	Weak transcription	HepG2	liver
29	chr8:103938200-103939800	Weak transcription	NHDF-Ad	bronchial
30	chr8:103938200-103941600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr8:103938200-103941600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:103938200-103942000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:103938200-103942200	Weak transcription	Fetal Lung	lung
34	chr8:103938200-103942200	Weak transcription	Hela-S3	cervix
35	chr8:103938200-103943600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:103938200-103947200	Weak transcription	Right Atrium	heart
37	chr8:103938400-103939000	Enhancers	Stomach Mucosa	stomach
38	chr8:103938400-103939800	Weak transcription	Fetal Intestine Large	intestine
39	chr8:103938400-103941600	Weak transcription	GM12878-XiMat	blood
40	chr8:103938600-103939000	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr8:103938600-103939000	Weak transcription	Pancreas	Pancrea
42	chr8:103938600-103939800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:103938600-103941600	Weak transcription	Fetal Intestine Small	intestine
44	chr8:103938800-103939000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr8:103938800-103939000	Enhancers	Duodenum Mucosa	Duodenum
46	chr8:103938800-103939000	Enhancers	Gastric	stomach
47	chr8:103938800-103940000	Weak transcription	A549	lung

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