Variant report

Variant	rs558010188
Chromosome Location	chr10:53692949-53692950
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948009	chr10:53692468-53694473	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53680200-53694600	Weak transcription	Aorta	Aorta
2	chr10:53688200-53694200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:53688400-53694400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:53692200-53693000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:53692200-53693000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:53692200-53693200	Enhancers	Fetal Lung	lung
7	chr10:53692600-53693000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:53692600-53694400	Weak transcription	Left Ventricle	heart
9	chr10:53692600-53697600	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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