Variant report

Variant	rs55801274
Chromosome Location	chr22:34367933-34367934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28784636	1.00[AMR][1000 genomes]
rs56014601	1.00[AMR][1000 genomes]
rs56131192	1.00[AMR][1000 genomes]
rs7285791	1.00[AMR][1000 genomes]
rs73882344	1.00[AMR][1000 genomes]
rs73882350	1.00[AMR][1000 genomes]
rs73882370	1.00[AMR][1000 genomes]
rs73882371	1.00[AMR][1000 genomes]
rs73882377	1.00[AMR][1000 genomes]
rs73882378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8136301	1.00[AMR][1000 genomes]
rs8138170	1.00[AMR][1000 genomes]
rs9941966	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv914990	chr22:34090440-34373293	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1061736	chr22:34178034-34394918	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv544689	chr22:34178034-34394918	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1066419	chr22:34231732-34553006	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv544690	chr22:34231732-34553006	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3343210	chr22:34236744-34404210	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1058391	chr22:34324887-34418020	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1066208	chr22:34325978-34421109	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv544691	chr22:34325978-34421109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:34365400-34369200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr22:34366400-34369000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr22:34366800-34368800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr22:34367200-34368200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr22:34367200-34369000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr22:34367400-34368000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr22:34367400-34368000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr22:34367400-34368000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr22:34367400-34368000	Enhancers	Brain Angular Gyrus	brain
10	chr22:34367400-34368200	Enhancers	Brain Hippocampus Middle	brain
11	chr22:34367400-34368400	Enhancers	Brain Substantia Nigra	brain
12	chr22:34367400-34368600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr22:34367600-34368000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr22:34367600-34368000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr22:34367600-34368000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr22:34367600-34368000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr22:34367600-34368200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr22:34367600-34368200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr22:34367600-34368400	Enhancers	Brain Cingulate Gyrus	brain
20	chr22:34367800-34368200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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