Variant report

Variant	rs55801940
Chromosome Location	chr1:158037784-158037785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158037503..158040836-chr1:158048548..158051276,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12135392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72711954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1005196	chr1:158015996-158065522	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv523208	chr1:158022217-158088687	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1003592	chr1:158024499-158061043	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157997600-158047600	Weak transcription	Dnd41	blood
2	chr1:158001200-158047400	Weak transcription	Thymus	Thymus
3	chr1:158023600-158048800	Weak transcription	A549	lung
4	chr1:158025800-158050000	Weak transcription	Hela-S3	cervix
5	chr1:158028200-158038800	Weak transcription	HUVEC	blood vessel
6	chr1:158029200-158038000	Weak transcription	Spleen	Spleen
7	chr1:158029200-158047200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:158030000-158046800	Weak transcription	Fetal Intestine Large	intestine
9	chr1:158030400-158040200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:158030600-158038800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:158030600-158040800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:158030800-158040000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:158031000-158041000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:158031400-158041000	Weak transcription	Fetal Intestine Small	intestine
15	chr1:158033600-158037800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:158034000-158038200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:158034800-158043400	Enhancers	Ovary	ovary
18	chr1:158035200-158041400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:158035400-158040400	Enhancers	Adipose Nuclei	Adipose
20	chr1:158035600-158039000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:158035600-158039000	Weak transcription	Fetal Kidney	kidney
22	chr1:158036000-158037800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:158036000-158038000	Enhancers	Left Ventricle	heart
24	chr1:158036000-158039400	Enhancers	HSMM	muscle
25	chr1:158036000-158040800	Enhancers	Brain Germinal Matrix	brain
26	chr1:158036200-158037800	Enhancers	Placenta	Placenta
27	chr1:158036200-158039400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr1:158036200-158048800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:158036400-158037800	Enhancers	HMEC	breast
30	chr1:158036400-158038000	Enhancers	Esophagus	oesophagus
31	chr1:158036400-158038000	Weak transcription	Fetal Heart	heart
32	chr1:158036400-158038200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:158036400-158038200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr1:158036400-158038800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:158036400-158039400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:158036400-158039600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr1:158036400-158040000	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr1:158036400-158042400	Enhancers	Fetal Muscle Leg	muscle
39	chr1:158036600-158038000	Enhancers	Aorta	Aorta
40	chr1:158036600-158039000	Enhancers	Muscle Satellite Cultured Cells	--
41	chr1:158036600-158039000	Enhancers	HSMMtube	muscle
42	chr1:158036600-158039200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr1:158036600-158040800	Enhancers	Colon Smooth Muscle	Colon
44	chr1:158036600-158049200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:158036800-158038200	Enhancers	Right Atrium	heart
46	chr1:158036800-158038200	Enhancers	NH-A	brain
47	chr1:158036800-158039800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr1:158036800-158040000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:158036800-158041200	Enhancers	Rectal Smooth Muscle	rectum
50	chr1:158036800-158041200	Enhancers	NHDF-Ad	bronchial

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