Variant report

Variant	rs558020557
Chromosome Location	chr20:24450699-24450700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3400513	chr20:24449177-24451725	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24449200-24451200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr20:24449200-24452200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr20:24449400-24451000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr20:24449400-24451000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr20:24449400-24451000	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr20:24449400-24451600	Bivalent/Poised TSS	Colonic Mucosa	Colon
7	chr20:24449400-24452200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr20:24449400-24452200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr20:24449400-24452200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr20:24449400-24452200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr20:24449400-24452200	Active TSS	Brain Angular Gyrus	brain
12	chr20:24449400-24452200	Active TSS	Brain Cingulate Gyrus	brain
13	chr20:24449400-24452400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
14	chr20:24449400-24452400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr20:24449400-24452400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr20:24449600-24450800	Active TSS	H9 Cell Line	embryonic stem cell
17	chr20:24449600-24450800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr20:24449600-24451000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr20:24449600-24451000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr20:24449600-24451000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr20:24449600-24451800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
22	chr20:24449600-24452000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr20:24449600-24452000	Active TSS	Ovary	ovary
24	chr20:24449600-24452200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr20:24449600-24452200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr20:24449600-24452200	Active TSS	Brain Substantia Nigra	brain
27	chr20:24449600-24452400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
28	chr20:24449600-24452400	Active TSS	Brain Anterior Caudate	brain
29	chr20:24449800-24450800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr20:24449800-24450800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr20:24449800-24450800	Active TSS	NH-A	brain
32	chr20:24449800-24451000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr20:24449800-24451000	Active TSS	Brain Hippocampus Middle	brain
34	chr20:24449800-24451000	Active TSS	Fetal Brain Female	brain
35	chr20:24449800-24451000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
36	chr20:24449800-24451200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
37	chr20:24449800-24451200	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr20:24449800-24451200	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr20:24449800-24451400	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr20:24449800-24451400	Bivalent Enhancer	Lung	lung
41	chr20:24449800-24451800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
42	chr20:24449800-24451800	Enhancers	Pancreas	Pancrea
43	chr20:24449800-24451800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
44	chr20:24449800-24451800	Bivalent/Poised TSS	Right Ventricle	heart
45	chr20:24449800-24451800	Bivalent/Poised TSS	HMEC	breast
46	chr20:24449800-24452000	Flanking Bivalent TSS/Enh	Thymus	Thymus
47	chr20:24449800-24452000	Bivalent/Poised TSS	A549	lung
48	chr20:24449800-24452200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr20:24449800-24452200	Active TSS	Aorta	Aorta
50	chr20:24449800-24452200	Active TSS	Fetal Kidney	kidney

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