Variant report

Variant	rs558027637
Chromosome Location	chr15:75109425-75109426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr15:75109031-75110123	T-47D	breast:	n/a	chr15:75109930-75109945 chr15:75109930-75109947
2	ELF1	chr15:75109268-75110145	MCF-7	breast:	n/a	n/a
3	SIN3AK20	chr15:75109006-75110213	MCF-7	breast:	n/a	n/a
4	SIN3AK20	chr15:75109331-75110162	MCF-7	breast:	n/a	n/a
5	ESR1	chr15:75109107-75110177	T-47D	breast:	n/a	chr15:75109930-75109945 chr15:75109930-75109947
6	EP300	chr15:75109377-75110162	MCF-7	breast:	n/a	n/a
7	ZNF263	chr15:75109364-75110110	HEK293-T-REx	kidney:	n/a	chr15:75110057-75110066
8	ESR1	chr15:75109301-75110059	T-47D	breast:	n/a	chr15:75109930-75109945 chr15:75109930-75109947
9	TCF12	chr15:75109105-75110205	MCF-7	breast:	n/a	chr15:75109212-75109222
10	MXI1	chr15:75109005-75110148	SK-N-SH	brain:	n/a	n/a
11	GATA3	chr15:75108978-75110143	MCF-7	breast:	n/a	chr15:75109980-75109987
12	ESR1	chr15:75109359-75110144	T-47D	breast:	n/a	chr15:75109930-75109945 chr15:75109930-75109947
13	HA-E2F1	chr15:75109368-75110048	MCF-7	breast:	n/a	n/a
14	ESR1	chr15:75109084-75110146	T-47D	breast:	n/a	chr15:75109930-75109945 chr15:75109930-75109947
15	GATA3	chr15:75109191-75110084	MCF-7	breast:	n/a	chr15:75109980-75109987
16	GATA3	chr15:75109065-75109838	T-47D	breast:	n/a	n/a
17	ZNF217	chr15:75109264-75110083	MCF-7	breast:	n/a	n/a
18	USF2	chr15:75109409-75109474	HepG2	liver:	n/a	n/a
19	NR2F2	chr15:75109054-75110170	MCF-7	breast:	n/a	n/a
20	HDAC2	chr15:75109315-75110165	MCF-7	breast:	n/a	n/a
21	EP300	chr15:75109103-75110147	MCF-7	breast:	n/a	chr15:75109230-75109237
22	GATA3	chr15:75109258-75110185	MCF-7	breast:	n/a	chr15:75109980-75109987
23	MAX	chr15:75109162-75110109	MCF-7	breast:	n/a	n/a
24	FOXM1	chr15:75109232-75110140	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75109328..75110019-chr15:75193813..75194663,2	MCF-7	breast:
2	chr15:75074156..75079604-chr15:75107384..75112501,9	MCF-7	breast:
3	chr1:150951967..150952513-chr15:75109160..75110043,2	MCF-7	breast:
4	chr15:75109403..75110158-chr15:75139541..75140351,8	MCF-7	breast:
5	chr15:75107962..75109830-chr15:75247955..75249471,2	K562	blood:
6	chr15:75092200..75093072-chr15:75108800..75110484,5	MCF-7	breast:
7	chr15:75081235..75085402-chr15:75108223..75111318,4	MCF-7	breast:
8	chr15:75108017..75109912-chr15:75114230..75116710,2	MCF-7	breast:
9	chr15:75072350..75078841-chr15:75107920..75114107,12	MCF-7	breast:
10	chr15:75109188..75110335-chr15:75127274..75128567,6	MCF-7	breast:
11	chr15:74907471..74909461-chr15:75108949..75111187,2	MCF-7	breast:
12	chr15:75108356..75114001-chr15:75126388..75130558,9	MCF-7	breast:
13	chr15:75106165..75113668-chr15:75132311..75136608,10	MCF-7	breast:
14	chr15:75080218..75087203-chr15:75106250..75113071,13	MCF-7	breast:
15	chr15:75107985..75111072-chr15:75197111..75200997,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261606	TF binding region
LMAN1L	TF binding region
ENSG00000260919	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000264386	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000140474	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv520527	chr15:75108636-75122856	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75096200-75109600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:75096800-75109800	Weak transcription	NH-A	brain
3	chr15:75097600-75111000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:75101800-75113200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:75102600-75109600	Weak transcription	NHLF	lung
6	chr15:75107000-75112200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr15:75107200-75109600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:75107200-75110000	Enhancers	Colon Smooth Muscle	Colon
9	chr15:75107200-75111200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr15:75107200-75111400	Enhancers	Esophagus	oesophagus
11	chr15:75107200-75111800	Enhancers	Colonic Mucosa	Colon
12	chr15:75107200-75112400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr15:75107200-75114400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:75107800-75109800	Weak transcription	A549	lung
15	chr15:75108000-75109600	Weak transcription	Pancreas	Pancrea
16	chr15:75108000-75109800	Weak transcription	Liver	Liver
17	chr15:75108000-75113000	Weak transcription	Right Atrium	heart
18	chr15:75108200-75111000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:75108200-75111000	Weak transcription	GM12878-XiMat	blood
20	chr15:75108200-75111400	Weak transcription	HSMMtube	muscle
21	chr15:75108400-75109600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:75108400-75110400	Weak transcription	Gastric	stomach
23	chr15:75108400-75110600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:75108600-75109800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:75108600-75110000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr15:75108600-75110600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr15:75108600-75111400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:75108600-75111600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:75108800-75110000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr15:75108800-75110000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr15:75108800-75110600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:75108800-75111400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:75108800-75112600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:75109000-75109600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:75109000-75110000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr15:75109000-75110000	Enhancers	Fetal Brain Male	brain
37	chr15:75109000-75110000	Enhancers	Fetal Intestine Large	intestine
38	chr15:75109000-75110000	Flanking Active TSS	HepG2	liver
39	chr15:75109000-75110800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr15:75109000-75111400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr15:75109000-75111600	Enhancers	Placenta	Placenta
42	chr15:75109000-75111600	Enhancers	HMEC	breast
43	chr15:75109000-75111800	Enhancers	Spleen	Spleen
44	chr15:75109200-75109600	Enhancers	H9 Cell Line	embryonic stem cell
45	chr15:75109200-75109600	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr15:75109200-75109600	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr15:75109200-75109600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:75109200-75109800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:75109200-75110000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr15:75109200-75110000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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