Variant report

Variant	rs55803510
Chromosome Location	chr9:8613311-8613312
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1337807	1.00[AMR][1000 genomes]
rs55651018	1.00[AMR][1000 genomes]
rs55664033	1.00[AMR][1000 genomes]
rs55789848	1.00[AMR][1000 genomes]
rs56349253	1.00[AMR][1000 genomes]
rs72696673	1.00[AMR][1000 genomes]
rs72696686	1.00[AMR][1000 genomes]
rs72698230	1.00[AMR][1000 genomes]
rs72698242	1.00[AMR][1000 genomes]
rs72698248	1.00[AMR][1000 genomes]
rs72698252	1.00[AMR][1000 genomes]
rs72700315	1.00[AMR][1000 genomes]
rs72700321	1.00[AMR][1000 genomes]
rs72700323	1.00[AMR][1000 genomes]
rs72700338	1.00[AMR][1000 genomes]
rs72700346	1.00[AMR][1000 genomes]
rs72700348	1.00[AMR][1000 genomes]
rs72700365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv892230	chr9:8569186-8643259	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv892231	chr9:8569186-8659757	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv613291	chr9:8573166-8615045	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8583600-8613600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:8586000-8618000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:8588200-8613600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:8597200-8615000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:8600200-8615000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:8601800-8613400	Weak transcription	Aorta	Aorta
7	chr9:8603000-8613400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:8607200-8613600	Weak transcription	Fetal Lung	lung
9	chr9:8609600-8614600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:8610600-8616800	Weak transcription	Ovary	ovary
11	chr9:8610800-8613400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr9:8611400-8615600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:8611600-8613800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:8612200-8613600	Weak transcription	Fetal Brain Male	brain
15	chr9:8612200-8613800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:8612200-8615400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr9:8612400-8613400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr9:8612400-8613800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr9:8612400-8614000	Enhancers	Brain Anterior Caudate	brain
20	chr9:8612400-8615600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr9:8612400-8615600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr9:8612400-8615600	Enhancers	Brain Substantia Nigra	brain
23	chr9:8612600-8613800	Enhancers	Brain Angular Gyrus	brain
24	chr9:8612600-8614000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr9:8612600-8615600	Enhancers	Brain Hippocampus Middle	brain
26	chr9:8612800-8613600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:8612800-8614400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:8613200-8613400	Flanking Active TSS	Fetal Heart	heart
29	chr9:8613200-8614600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:8613200-8614600	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links