Variant report

Variant	rs55804712
Chromosome Location	chr7:5636045-5636046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:5635670..5636537-chr7:5704737..5705483,2	MCF-7	breast:
2	chr7:5634585..5636582-chr7:5716195..5717760,2	K562	blood:
3	chr7:5551336..5555391-chr7:5631153..5637818,11	K562	blood:
4	chr7:5595573..5597650-chr7:5633861..5636258,2	MCF-7	breast:
5	chr7:5568679..5572411-chr7:5632886..5636261,4	MCF-7	breast:
6	chr7:5563317..5574038-chr7:5630450..5643029,58	K562	blood:
7	chr7:5533112..5541360-chr7:5629989..5636364,13	K562	blood:

Variant related genes	Relation type
ENSG00000075624	Chromatin interaction
ENSG00000155034	Chromatin interaction
ENSG00000207973	Chromatin interaction
ENSG00000263900	Chromatin interaction
ENSG00000272719	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2966447	0.81[EUR][1000 genomes]
rs55718102	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56113524	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56187290	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs852478	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
2	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
3	nsv530981	chr7:5157150-5920006	Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
4	esv1814049	chr7:5314993-5675131	Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	333 gene(s)	inside rSNPs	diseases
5	esv1820266	chr7:5332088-5665173	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
6	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
7	nsv887404	chr7:5402606-5667645	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
8	nsv916391	chr7:5417945-5889565	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
9	nsv887408	chr7:5432672-5667645	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
10	nsv830890	chr7:5464933-5705158	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
11	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
12	nsv1025434	chr7:5537571-5705283	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
13	nsv482449	chr7:5557585-5743673	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
14	nsv1033556	chr7:5565080-6186815	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
15	nsv538710	chr7:5565080-6186815	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
16	nsv887414	chr7:5584934-5667645	Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
17	nsv887415	chr7:5584934-5675305	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
18	nsv887416	chr7:5584934-5695259	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
19	nsv530467	chr7:5617816-5815082	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
20	nsv1017612	chr7:5629728-5819144	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
21	nsv1021989	chr7:5629728-6186815	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5631200-5636200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr7:5631200-5636800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:5631600-5636400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:5631600-5636800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:5631800-5636200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr7:5632000-5636200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:5632000-5636200	Active TSS	Fetal Kidney	kidney
8	chr7:5632400-5636400	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr7:5633000-5636600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:5633600-5636200	Active TSS	Gastric	stomach
11	chr7:5634200-5636200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
12	chr7:5634400-5636200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:5634400-5636400	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:5634400-5636400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr7:5634400-5636400	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
16	chr7:5634400-5636600	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:5634400-5636800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:5634400-5636800	Transcr. at gene 5' and 3'	NHEK	skin
19	chr7:5634400-5637000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:5634400-5639600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:5634600-5636200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr7:5634600-5636200	Flanking Active TSS	Fetal Muscle Trunk	muscle
23	chr7:5634600-5636400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:5634600-5636400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
25	chr7:5634600-5636800	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr7:5634600-5637000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:5634800-5636200	Flanking Active TSS	Fetal Brain Female	brain
28	chr7:5634800-5636400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr7:5634800-5636600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:5634800-5636600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
31	chr7:5634800-5636600	Enhancers	Pancreas	Pancrea
32	chr7:5634800-5636800	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr7:5634800-5636800	Bivalent Enhancer	Stomach Mucosa	stomach
34	chr7:5634800-5640200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:5635000-5636200	Flanking Active TSS	Fetal Brain Male	brain
36	chr7:5635000-5636800	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr7:5635000-5636800	Flanking Active TSS	GM12878-XiMat	blood
38	chr7:5635200-5636200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:5635200-5636200	Active TSS	Placenta Amnion	Placenta Amnion
40	chr7:5635200-5636400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:5635200-5636600	Enhancers	Right Atrium	heart
42	chr7:5635200-5636800	Flanking Active TSS	K562	blood
43	chr7:5635400-5636200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:5635400-5636600	Enhancers	Lung	lung
45	chr7:5635600-5636200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr7:5635600-5636200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr7:5635600-5636200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:5635600-5636400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr7:5635600-5636400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr7:5635600-5636800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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