Variant report

Variant	rs55805305
Chromosome Location	chr13:30740937-30740938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1107118	1.00[EUR][1000 genomes]
rs11839185	1.00[EUR][1000 genomes]
rs11841189	1.00[EUR][1000 genomes]
rs73443604	1.00[EUR][1000 genomes]
rs73458409	1.00[EUR][1000 genomes]
rs73458414	1.00[EUR][1000 genomes]
rs73458419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73458420	1.00[EUR][1000 genomes]
rs73460544	1.00[EUR][1000 genomes]
rs73460549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74043036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040215	chr13:30621351-30741022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541745	chr13:30621351-30741022	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv561393	chr13:30726893-30748122	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30733400-30743600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr13:30734000-30744600	Weak transcription	Primary T cells from cord blood	blood
3	chr13:30734600-30745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:30738600-30747400	Weak transcription	Spleen	Spleen
5	chr13:30738800-30741000	Weak transcription	Fetal Thymus	thymus
6	chr13:30739000-30741400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:30740000-30741600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:30740400-30741000	Enhancers	Brain Cingulate Gyrus	brain
9	chr13:30740400-30744800	Weak transcription	Fetal Brain Male	brain
10	chr13:30740400-30747600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr13:30740400-30753400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:30740600-30741400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr13:30740600-30741400	Enhancers	Fetal Kidney	kidney
14	chr13:30740600-30752800	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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