Variant report

Variant	rs558057668
Chromosome Location	chr17:53565480-53565481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:53559082..53561772-chr17:53563731..53566887,3	K562	blood:
2	chr17:53564070..53566342-chr17:53569754..53572589,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2100	chr17:53492380-54328516	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1062337	chr17:53510996-54161442	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv833490	chr17:53564973-53612482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:53564800-53565600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr17:53564800-53565600	Enhancers	Fetal Stomach	stomach
3	chr17:53564800-53565600	Enhancers	Rectal Smooth Muscle	rectum
4	chr17:53564800-53566200	Enhancers	HepG2	liver
5	chr17:53565000-53565600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr17:53565000-53565600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr17:53565000-53565600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr17:53565000-53565600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr17:53565000-53565600	Enhancers	Fetal Lung	lung
10	chr17:53565000-53565600	Enhancers	Fetal Muscle Leg	muscle
11	chr17:53565000-53566000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr17:53565000-53566000	Enhancers	A549	lung
13	chr17:53565000-53566200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr17:53565000-53566400	Enhancers	Adipose Nuclei	Adipose
15	chr17:53565200-53565600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr17:53565200-53565600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr17:53565200-53565600	Enhancers	Placenta	Placenta
18	chr17:53565200-53565600	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr17:53565200-53565800	Enhancers	Liver	Liver
20	chr17:53565200-53565800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr17:53565200-53565800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr17:53565200-53570200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr17:53565400-53573600	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links