Variant report

Variant	rs558071059
Chromosome Location	chr2:168149766-168149767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-XIRP2-1	chr2:168149681-168149844	XLOC_001742

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3412741	chr2:168148456-168151654	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168148400-168150600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr2:168148600-168149800	Active TSS	Muscle Satellite Cultured Cells	--
3	chr2:168148600-168149800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:168148600-168149800	Active TSS	Stomach Smooth Muscle	stomach
5	chr2:168148600-168149800	Bivalent/Poised TSS	HUVEC	blood vessel
6	chr2:168148600-168150000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:168148600-168150000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
8	chr2:168148600-168150200	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr2:168148600-168150200	Active TSS	NH-A	brain
10	chr2:168148600-168150600	Active TSS	Right Atrium	heart
11	chr2:168148600-168150800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr2:168148600-168150800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:168148600-168150800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:168148600-168151600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:168148600-168151600	Active TSS	Rectal Mucosa Donor 31	rectum
16	chr2:168148600-168151800	Active TSS	H1 Cell Line	embryonic stem cell
17	chr2:168148600-168151800	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr2:168148600-168151800	Active TSS	Brain Hippocampus Middle	brain
19	chr2:168148600-168151800	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr2:168148600-168151800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr2:168148600-168151800	Active TSS	NHLF	lung
22	chr2:168148600-168152000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:168148600-168152000	Active TSS	Brain Anterior Caudate	brain
24	chr2:168148600-168152200	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr2:168148800-168149800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:168148800-168149800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:168148800-168149800	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr2:168148800-168149800	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
29	chr2:168148800-168149800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:168148800-168149800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:168148800-168149800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:168148800-168149800	Active TSS	Adipose Nuclei	Adipose
33	chr2:168148800-168149800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
34	chr2:168148800-168149800	Active TSS	Fetal Muscle Leg	muscle
35	chr2:168148800-168149800	Active TSS	Ovary	ovary
36	chr2:168148800-168149800	Active TSS	Pancreas	Pancrea
37	chr2:168148800-168149800	Bivalent/Poised TSS	Thymus	Thymus
38	chr2:168148800-168149800	Active TSS	Spleen	Spleen
39	chr2:168148800-168149800	Bivalent/Poised TSS	A549	lung
40	chr2:168148800-168149800	Active TSS	HSMM	muscle
41	chr2:168148800-168149800	Bivalent/Poised TSS	NHEK	skin
42	chr2:168148800-168150000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr2:168148800-168150000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr2:168148800-168150000	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr2:168148800-168150000	Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr2:168148800-168150000	Active TSS	Fetal Lung	lung
47	chr2:168148800-168150000	Active TSS	Psoas Muscle	Psoas
48	chr2:168148800-168150000	Active TSS	Right Ventricle	heart
49	chr2:168148800-168150200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr2:168148800-168150200	Active TSS	Pancreatic Islets	Pancreatic Islet

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