Variant report

Variant	rs55808777
Chromosome Location	chr14:85722088-85722089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12431801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432038	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12432305	1.00[ASN][1000 genomes]
rs12433588	1.00[ASN][1000 genomes]
rs12435059	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435067	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435945	1.00[ASN][1000 genomes]
rs12436027	1.00[ASN][1000 genomes]
rs12589547	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17120910	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4904243	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57832147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66538839	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66793589	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68024979	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687566	1.00[ASN][1000 genomes]
rs72689111	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85717200-85727800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:85717400-85723400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:85720600-85723600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:85720800-85723800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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