Variant report

Variant	rs55808779
Chromosome Location	chr11:85873085-85873086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85855764..85858866-chr11:85871267..85874151,3	K562	blood:
2	chr11:85872034..85874888-chr11:85925507..85928430,2	K562	blood:
3	chr11:85672259..85674642-chr11:85872372..85874123,2	K562	blood:
4	chr11:85871686..85873473-chr11:85953832..85955582,2	K562	blood:
5	chr11:85856529..85858866-chr11:85871267..85874151,2	K562	blood:
6	chr11:85859696..85863993-chr11:85872249..85875647,5	K562	blood:
7	chr11:85872408..85874802-chr11:85892436..85894621,2	K562	blood:
8	chr11:85867086..85869713-chr11:85872551..85875438,3	K562	blood:

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11823685	0.89[AFR][1000 genomes]
rs73511848	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73511855	0.89[AFR][1000 genomes]
rs73511857	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85865400-85874400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:85866400-85874200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:85867400-85875800	Enhancers	Placenta	Placenta
4	chr11:85868000-85876200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:85868600-85874600	Enhancers	Fetal Stomach	stomach
6	chr11:85868800-85876600	Enhancers	Hela-S3	cervix
7	chr11:85869000-85874400	Enhancers	NHEK	skin
8	chr11:85870200-85874400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:85870200-85875800	Enhancers	Brain Hippocampus Middle	brain
10	chr11:85870400-85873600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:85870400-85874200	Enhancers	K562	blood
12	chr11:85870400-85875200	Enhancers	Fetal Muscle Leg	muscle
13	chr11:85870600-85873600	Enhancers	GM12878-XiMat	blood
14	chr11:85870600-85873800	Enhancers	Fetal Lung	lung
15	chr11:85870600-85874200	Enhancers	Fetal Intestine Large	intestine
16	chr11:85870600-85874600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:85870600-85874800	Enhancers	Ovary	ovary
18	chr11:85870600-85875800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:85870800-85873800	Enhancers	HSMM	muscle
20	chr11:85870800-85875000	Enhancers	HMEC	breast
21	chr11:85871000-85873400	Enhancers	HepG2	liver
22	chr11:85871000-85874000	Enhancers	Small Intestine	intestine
23	chr11:85871000-85874400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:85871000-85875000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:85871000-85876000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr11:85871200-85873200	Enhancers	Fetal Intestine Small	intestine
27	chr11:85871200-85874400	Enhancers	Colon Smooth Muscle	Colon
28	chr11:85871200-85874400	Enhancers	Duodenum Mucosa	Duodenum
29	chr11:85871200-85875000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:85871400-85874200	Enhancers	Brain Cingulate Gyrus	brain
31	chr11:85871600-85873600	Enhancers	Brain Anterior Caudate	brain
32	chr11:85871600-85873600	Enhancers	HSMMtube	muscle
33	chr11:85871600-85874200	Enhancers	Brain Angular Gyrus	brain
34	chr11:85871600-85875200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:85871600-85875400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:85871600-85875400	Enhancers	Primary hematopoietic stem cells	blood
37	chr11:85871800-85873600	Enhancers	Brain Substantia Nigra	brain
38	chr11:85871800-85874000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:85871800-85874400	Enhancers	Rectal Smooth Muscle	rectum
40	chr11:85871800-85874600	Enhancers	A549	lung
41	chr11:85871800-85874600	Enhancers	NH-A	brain
42	chr11:85871800-85876000	Enhancers	Adipose Nuclei	Adipose
43	chr11:85872000-85873200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:85872000-85873400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:85872000-85873600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:85872000-85873800	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr11:85872200-85873200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:85872200-85873800	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr11:85872200-85875400	Enhancers	Muscle Satellite Cultured Cells	--
50	chr11:85872600-85873200	Enhancers	Rectal Mucosa Donor 31	rectum

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