Variant report

Variant	rs558098249
Chromosome Location	chr15:52028434-52028435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52028180..52031136-chr15:52040562..52045385,6	MCF-7	breast:
2	chr15:51914058..51915723-chr15:52028393..52030272,2	MCF-7	breast:
3	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
4	chr15:52026672..52029372-chr15:52056834..52058990,2	MCF-7	breast:
5	chr15:51762002..51764362-chr15:52028309..52030001,2	MCF-7	breast:
6	chr15:52026416..52029376-chr15:52033345..52036135,2	K562	blood:
7	chr15:51911576..51916583-chr15:52027382..52031699,5	MCF-7	breast:
8	chr15:52028355..52032748-chr15:52040539..52046492,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction
ENSG00000104093	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000128872	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	esv3322785	chr15:52028185-52031033	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52013600-52028800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:52020000-52028800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:52020200-52029000	Weak transcription	NH-A	brain
4	chr15:52024400-52028800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:52024400-52028800	Weak transcription	Right Ventricle	heart
6	chr15:52024600-52028600	Weak transcription	Fetal Stomach	stomach
7	chr15:52024600-52028800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:52024600-52028800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:52024600-52028800	Weak transcription	Osteobl	bone
10	chr15:52024600-52029000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:52025000-52028600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:52025000-52028800	Weak transcription	Left Ventricle	heart
13	chr15:52025200-52028800	Weak transcription	HSMMtube	muscle
14	chr15:52025400-52029000	Weak transcription	Esophagus	oesophagus
15	chr15:52026400-52029400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:52026600-52028600	Enhancers	K562	blood
17	chr15:52026800-52028800	Weak transcription	Psoas Muscle	Psoas
18	chr15:52026800-52029000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr15:52027000-52030400	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr15:52027200-52029200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:52027200-52029400	Flanking Active TSS	Dnd41	blood
22	chr15:52027400-52029200	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr15:52027400-52029200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr15:52027400-52029400	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr15:52027600-52028800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:52027600-52028800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr15:52027600-52028800	Enhancers	Colon Smooth Muscle	Colon
28	chr15:52027600-52029000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:52027800-52028600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr15:52027800-52028800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr15:52027800-52028800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr15:52027800-52029000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:52027800-52029200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:52027800-52029200	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr15:52027800-52029400	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr15:52027800-52029400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:52028000-52028600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:52028000-52028600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr15:52028000-52028800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:52028000-52028800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr15:52028000-52029000	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr15:52028000-52029000	Enhancers	Spleen	Spleen
43	chr15:52028000-52029200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
44	chr15:52028000-52029200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr15:52028000-52029200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr15:52028000-52029200	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr15:52028000-52029200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr15:52028000-52029400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr15:52028200-52028600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:52028200-52028600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links